Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NFK94_RS17375 Genome accession   NZ_CP099338
Coordinates   3572866..3573846 (-) Length   326 a.a.
NCBI ID   WP_072048899.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB44-C01     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3567866..3578846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK94_RS17345 (NFK94_17315) - 3568590..3569087 (+) 498 WP_104917519.1 SprT family zinc-dependent metalloprotease -
  NFK94_RS17350 (NFK94_17320) endA 3569182..3569889 (+) 708 WP_104920303.1 deoxyribonuclease I -
  NFK94_RS17355 (NFK94_17325) rsmE 3569969..3570700 (+) 732 WP_021545744.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NFK94_RS17360 (NFK94_17330) gshB 3570713..3571663 (+) 951 WP_000593298.1 glutathione synthase -
  NFK94_RS17365 (NFK94_17335) - 3571772..3572335 (+) 564 WP_002431379.1 YqgE/AlgH family protein -
  NFK94_RS17370 (NFK94_17340) ruvX 3572335..3572751 (+) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  NFK94_RS17375 (NFK94_17345) pilT 3572866..3573846 (-) 981 WP_072048899.1 type IV pilus twitching motility protein PilT Machinery gene
  NFK94_RS17380 (NFK94_17350) yggS 3573864..3574568 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  NFK94_RS17385 (NFK94_17355) yggT 3574586..3575152 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  NFK94_RS17390 (NFK94_17360) yggU 3575149..3575439 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  NFK94_RS17395 (NFK94_17365) - 3575447..3576040 (+) 594 WP_001174747.1 XTP/dITP diphosphatase -
  NFK94_RS17400 (NFK94_17370) hemW 3576033..3577169 (+) 1137 WP_000239970.1 radical SAM family heme chaperone HemW -
  NFK94_RS17405 (NFK94_17375) - 3577483..3578469 (+) 987 WP_000783993.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35970.22 Da        Isoelectric Point: 5.9975

>NTDB_id=698873 NFK94_RS17375 WP_072048899.1 3572866..3573846(-) (pilT) [Escherichia fergusonii strain RHB44-C01]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAEKQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=698873 NFK94_RS17375 WP_072048899.1 3572866..3573846(-) (pilT) [Escherichia fergusonii strain RHB44-C01]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAATGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTGGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGTTGGATTTTGCCGTGTCGCTGGCGGAAAAACAGCGATTGCGCGGC
AGTGCGTTCGCGCAACGGCAAGGCATTTCTCTGGCGTTACGGCTGTTGCCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGATATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTAACGGGGGCGACGGGAAGTGGAAAAT
CTACCACGCTGGCAGCGATGGTTGGTTATCTCAATCAACATGCTGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGGTGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
TGCCGCATTGCGGGAAGATCCCGATGTGATATTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACCG
CGGCAGAAACCGGACATCTGGTGCTGGCGACCTTACATACACGCGGTGCCGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCAGGTAGTTTACGGGCAGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGATTAACACACCCGCGGTGGGGAATTTGATACGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACTGGGCAGCAGGTGGGGATGTTGACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(63-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.847

100

0.5
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.847

100

0.5
  pilT Neisseria meningitidis 8013

49.085

100

0.494
  pilT Neisseria gonorrhoeae MS11

48.78

100

0.491
  pilT Acinetobacter baylyi ADP1

47.095

100

0.472
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain Lp02

45.566

100

0.457
  pilT Legionella pneumophila strain ERS1305867

45.566

100

0.457
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.453

97.546

0.414
  pilU Vibrio cholerae strain A1552

39.21

100

0.396
  pilU Pseudomonas stutzeri DSM 10701

37.273

100

0.377
  pilU Acinetobacter baylyi ADP1

37.578

98.773

0.371