Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | SR187_RS00800 | Genome accession | NZ_AP018400 |
| Coordinates | 125450..125731 (+) | Length | 93 a.a. |
| NCBI ID | WP_024532254.1 | Uniprot ID | - |
| Organism | Streptococcus ruminantium strain GUT-187 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 120450..130731
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SR187_RS00780 (SR187_0805) | - | 122033..122401 (+) | 369 | WP_120171203.1 | DUF1033 family protein | - |
| SR187_RS00785 (SR187_0810) | - | 122439..123389 (-) | 951 | WP_024532257.1 | S66 peptidase family protein | - |
| SR187_RS00790 (SR187_0815) | comYA | 123551..124501 (+) | 951 | WP_120171204.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SR187_RS00795 (SR187_0820) | comYB | 124422..125453 (+) | 1032 | WP_120171205.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SR187_RS00800 (SR187_0825) | comYC | 125450..125731 (+) | 282 | WP_024532254.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SR187_RS00805 (SR187_0830) | comGD | 125718..126131 (+) | 414 | WP_024532253.1 | competence type IV pilus minor pilin ComGD | - |
| SR187_RS00810 (SR187_0835) | comYE | 126103..126396 (+) | 294 | WP_120172446.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SR187_RS00815 (SR187_0840) | comGF/cglF | 126383..126817 (+) | 435 | WP_120171206.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SR187_RS00820 (SR187_0845) | comGG | 126795..127208 (+) | 414 | WP_120171207.1 | competence type IV pilus minor pilin ComGG | - |
| SR187_RS00825 (SR187_0850) | comYH | 127213..128166 (+) | 954 | WP_120171208.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SR187_RS00830 (SR187_0855) | - | 128216..129403 (+) | 1188 | WP_120171209.1 | acetate kinase | - |
| SR187_RS00835 (SR187_0860) | - | 129708..130262 (+) | 555 | WP_120171210.1 | folate family ECF transporter S component | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 10719.63 Da Isoelectric Point: 9.4092
>NTDB_id=69429 SR187_RS00800 WP_024532254.1 125450..125731(+) (comYC) [Streptococcus ruminantium strain GUT-187]
MKKIIEMKNKAFTLVEMLVVLLIISVLLLLFVPNLSKHSETVQKKGNEAVVKIVESQQELYQLEHGHQPSAEELKNKGYI
TEKQLEQYQNAKK
MKKIIEMKNKAFTLVEMLVVLLIISVLLLLFVPNLSKHSETVQKKGNEAVVKIVESQQELYQLEHGHQPSAEELKNKGYI
TEKQLEQYQNAKK
Nucleotide
Download Length: 282 bp
>NTDB_id=69429 SR187_RS00800 WP_024532254.1 125450..125731(+) (comYC) [Streptococcus ruminantium strain GUT-187]
ATGAAAAAAATCATCGAAATGAAGAATAAAGCCTTTACACTGGTAGAGATGTTAGTTGTTCTTTTAATTATTAGTGTTCT
CTTGTTGCTTTTTGTGCCGAATTTGAGTAAGCACAGCGAAACTGTCCAGAAGAAAGGAAATGAAGCGGTTGTTAAAATTG
TAGAAAGTCAGCAAGAACTCTATCAATTGGAACACGGTCATCAACCTTCAGCAGAAGAGTTAAAAAATAAAGGATACATC
ACGGAAAAACAGCTAGAGCAATATCAGAATGCGAAGAAATAA
ATGAAAAAAATCATCGAAATGAAGAATAAAGCCTTTACACTGGTAGAGATGTTAGTTGTTCTTTTAATTATTAGTGTTCT
CTTGTTGCTTTTTGTGCCGAATTTGAGTAAGCACAGCGAAACTGTCCAGAAGAAAGGAAATGAAGCGGTTGTTAAAATTG
TAGAAAGTCAGCAAGAACTCTATCAATTGGAACACGGTCATCAACCTTCAGCAGAAGAGTTAAAAAATAAAGGATACATC
ACGGAAAAACAGCTAGAGCAATATCAGAATGCGAAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
66.667 |
100 |
0.667 |
| comGC/cglC | Streptococcus mitis SK321 |
59.783 |
98.925 |
0.591 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.14 |
100 |
0.591 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.14 |
100 |
0.591 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.14 |
100 |
0.591 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
59.14 |
100 |
0.591 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.14 |
100 |
0.591 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
57.778 |
96.774 |
0.559 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
54.444 |
96.774 |
0.527 |
| comYC | Streptococcus mutans UA140 |
53.333 |
96.774 |
0.516 |
| comYC | Streptococcus mutans UA159 |
53.333 |
96.774 |
0.516 |
| comGC | Staphylococcus aureus N315 |
51.282 |
83.871 |
0.43 |
| comGC | Staphylococcus aureus MW2 |
51.282 |
83.871 |
0.43 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
48.101 |
84.946 |
0.409 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
49.333 |
80.645 |
0.398 |