Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SR187_RS00825 | Genome accession | NZ_AP018400 |
| Coordinates | 127213..128166 (+) | Length | 317 a.a. |
| NCBI ID | WP_120171208.1 | Uniprot ID | A0A2Z5TWR7 |
| Organism | Streptococcus ruminantium strain GUT-187 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 122213..133166
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SR187_RS00785 (SR187_0810) | - | 122439..123389 (-) | 951 | WP_024532257.1 | S66 peptidase family protein | - |
| SR187_RS00790 (SR187_0815) | comYA | 123551..124501 (+) | 951 | WP_120171204.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SR187_RS00795 (SR187_0820) | comYB | 124422..125453 (+) | 1032 | WP_120171205.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SR187_RS00800 (SR187_0825) | comYC | 125450..125731 (+) | 282 | WP_024532254.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SR187_RS00805 (SR187_0830) | comGD | 125718..126131 (+) | 414 | WP_024532253.1 | competence type IV pilus minor pilin ComGD | - |
| SR187_RS00810 (SR187_0835) | comYE | 126103..126396 (+) | 294 | WP_120172446.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SR187_RS00815 (SR187_0840) | comGF/cglF | 126383..126817 (+) | 435 | WP_120171206.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SR187_RS00820 (SR187_0845) | comGG | 126795..127208 (+) | 414 | WP_120171207.1 | competence type IV pilus minor pilin ComGG | - |
| SR187_RS00825 (SR187_0850) | comYH | 127213..128166 (+) | 954 | WP_120171208.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SR187_RS00830 (SR187_0855) | - | 128216..129403 (+) | 1188 | WP_120171209.1 | acetate kinase | - |
| SR187_RS00835 (SR187_0860) | - | 129708..130262 (+) | 555 | WP_120171210.1 | folate family ECF transporter S component | - |
| SR187_RS00840 (SR187_0865) | - | 130361..131617 (+) | 1257 | WP_120171211.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| SR187_RS00845 (SR187_0870) | pepA | 131931..132992 (-) | 1062 | WP_120171212.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35821.96 Da Isoelectric Point: 4.4003
>NTDB_id=69432 SR187_RS00825 WP_120171208.1 127213..128166(+) (comYH) [Streptococcus ruminantium strain GUT-187]
MNFEKIEQVYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLIARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSAGIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFILQKQTARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
MNFEKIEQVYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLIARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSAGIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFILQKQTARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=69432 SR187_RS00825 WP_120171208.1 127213..128166(+) (comYH) [Streptococcus ruminantium strain GUT-187]
ATGAATTTTGAAAAGATTGAACAGGTCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTACGTAGCTGGCCAGCATGAGATTGATTTGATTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACTAAGGAAGAATGGCGTCGTTCCTATCAATTTCTCTTAATCAAGGCCAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACTCCACGAGTGACAATCTTAGAAATCGGATCAGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCGGTATCGCAGATGTCATGGAGGCAGAA
ATTAGCTTTGCTCAAGGTGATGCAGTGCGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCTATTGAAAATCTGGCTACAGGAGCAGGCCAATATTGTAGCTATGATTGCTCTTCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTATTCTACAAAAACAAACAGCTAGAGCACTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTGA
ATGAATTTTGAAAAGATTGAACAGGTCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTACGTAGCTGGCCAGCATGAGATTGATTTGATTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACTAAGGAAGAATGGCGTCGTTCCTATCAATTTCTCTTAATCAAGGCCAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACTCCACGAGTGACAATCTTAGAAATCGGATCAGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCGGTATCGCAGATGTCATGGAGGCAGAA
ATTAGCTTTGCTCAAGGTGATGCAGTGCGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCTATTGAAAATCTGGCTACAGGAGCAGGCCAATATTGTAGCTATGATTGCTCTTCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTATTCTACAAAAACAAACAGCTAGAGCACTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.759 |
99.685 |
0.606 |
| comYH | Streptococcus mutans UA159 |
60.443 |
99.685 |
0.603 |