Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   M5E03_RS14775 Genome accession   NZ_CP097374
Coordinates   2842537..2843178 (-) Length   213 a.a.
NCBI ID   WP_034282566.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB11     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837537..2848178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS14740 (M5E03_14740) - 2838663..2839094 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  M5E03_RS14745 (M5E03_14745) - 2839094..2839435 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  M5E03_RS14750 (M5E03_14750) - 2839428..2840906 (+) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  M5E03_RS14755 (M5E03_14755) - 2840913..2841392 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  M5E03_RS14760 (M5E03_14760) - 2841392..2841673 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  M5E03_RS14765 (M5E03_14765) mnhG 2841657..2842031 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  M5E03_RS14770 (M5E03_14770) - 2842124..2842513 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  M5E03_RS14775 (M5E03_14775) comA 2842537..2843178 (-) 642 WP_034282566.1 response regulator transcription factor Regulator
  M5E03_RS14780 (M5E03_14780) comP 2843259..2845571 (-) 2313 WP_041115820.1 ATP-binding protein Regulator
  M5E03_RS14785 (M5E03_14785) - 2845629..2845796 (-) 168 WP_080696376.1 competence pheromone ComX -
  M5E03_RS14790 (M5E03_14790) - 2845793..2846707 (-) 915 WP_041115818.1 polyprenyl synthetase family protein -
  M5E03_RS14795 (M5E03_14795) degQ 2846859..2846999 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  M5E03_RS14800 (M5E03_14800) - 2847505..2847861 (+) 357 WP_041115816.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24163.56 Da        Isoelectric Point: 4.6397

>NTDB_id=689277 M5E03_RS14775 WP_034282566.1 2842537..2843178(-) (comA) [Bacillus safensis strain AHB11]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=689277 M5E03_RS14775 WP_034282566.1 2842537..2843178(-) (comA) [Bacillus safensis strain AHB11]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGAGCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718