Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   M0D43_RS18235 Genome accession   NZ_CP096142
Coordinates   4265508..4266545 (+) Length   345 a.a.
NCBI ID   WP_003489919.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain CIX249     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4260508..4271545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D43_RS18200 (M0D43_18180) - 4260829..4261371 (-) 543 WP_313905035.1 hypothetical protein -
  M0D43_RS18205 (M0D43_18185) - 4261427..4261768 (-) 342 WP_260807433.1 DUF3861 domain-containing protein -
  M0D43_RS18210 (M0D43_18190) - 4261826..4262467 (-) 642 WP_260807434.1 M23 family metallopeptidase -
  M0D43_RS18215 (M0D43_18195) - 4262573..4262998 (-) 426 WP_101361623.1 HU family DNA-binding protein -
  M0D43_RS18220 (M0D43_18200) - 4263139..4263399 (-) 261 WP_260807435.1 hypothetical protein -
  M0D43_RS18225 (M0D43_18205) proC 4263545..4264405 (-) 861 WP_252162486.1 pyrroline-5-carboxylate reductase -
  M0D43_RS18230 (M0D43_18210) - 4264451..4265143 (-) 693 WP_252162487.1 YggS family pyridoxal phosphate-dependent enzyme -
  M0D43_RS18235 (M0D43_18215) pilT 4265508..4266545 (+) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  M0D43_RS18240 (M0D43_18220) pilU 4266668..4267798 (+) 1131 WP_101361619.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  M0D43_RS18245 (M0D43_18225) - 4268110..4268784 (+) 675 WP_252165121.1 YitT family protein -
  M0D43_RS18250 (M0D43_18230) - 4269073..4269354 (-) 282 Protein_3551 DUF72 domain-containing protein -
  M0D43_RS18255 (M0D43_18235) - 4269391..4269963 (-) 573 WP_260807437.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38643.30 Da        Isoelectric Point: 6.6652

>NTDB_id=679677 M0D43_RS18235 WP_003489919.1 4265508..4266545(+) (pilT) [Xanthomonas prunicola strain CIX249]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=679677 M0D43_RS18235 WP_003489919.1 4265508..4266545(+) (pilT) [Xanthomonas prunicola strain CIX249]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGTCGCATCAATATTCCGGCGTTGGACCATAAACAGGTGCATGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGGCGCGATTACGAAGAATTCCTCGAGGTCGACTTCTCGTTCGAGATTCCCTCGCTGGCGCGC
TTCCGCGTCAATGCGTTCAACCAGAACCGTGGCGCCGGTGCGGTGTTCCGCACCATTCCCTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGTTGATCGACCAGCCGCAGGGCCTGATCCTGGTGACCGGCCCGACCGGTT
CCGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGATACGCACGGCTTCAACGA
AGCGCTGCGCTCGGCCTTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTCACCGCTGCGGAAACCGGCCACTTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGTTGTCCGAATCCCTGCGCGCGGTGATTTCGCAGGC
ATTGCTCAAGAAAGTGGGCGGCGGACGTACCGCAGCCTGGGAAATCATGGTCGGCACTCCGGCGATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGTCGATCCAGACCGGCCAGCAATACGGCATGCAGACGCTGGACCAGCATCTG
CAGGATCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCCCGTGAATACGCCAAGGACAAGCGGATATTTGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.942

99.71

0.797
  pilT Acinetobacter baumannii D1279779

79.942

99.71

0.797
  pilT Acinetobacter baumannii strain A118

79.942

99.71

0.797
  pilT Pseudomonas stutzeri DSM 10701

79.36

99.71

0.791
  pilT Acinetobacter baylyi ADP1

78.779

99.71

0.786
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394