NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	MZO21_RS01195	Genome accession	NZ_CP096120
Coordinates	251293..251715 (+)	Length	140 a.a.
NCBI ID	WP_282441519.1	Uniprot ID	-
Organism	Acinetobacter portensis strain JNE5
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 246293..256715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MZO21_RS01170 (MZO21_01165)	-	247242..248663 (+)	1422	WP_248101207.1	FAD-dependent oxidoreductase	-
MZO21_RS01175 (MZO21_01170)	-	248851..249441 (+)	591	WP_248101209.1	LemA family protein	-
MZO21_RS01180 (MZO21_01175)	-	249476..250543 (+)	1068	WP_248101213.1	TPM domain-containing protein	-
MZO21_RS01185 (MZO21_01180)	-	250537..251097 (+)	561	WP_248101216.1	TPM domain-containing protein	-
MZO21_RS01195 (MZO21_01190)	pilA	251293..251715 (+)	423	WP_282441519.1	pilin	Machinery gene
MZO21_RS01200 (MZO21_01195)	-	251785..253725 (+)	1941	WP_248101221.1	hypothetical protein	-
MZO21_RS01205 (MZO21_01200)	-	253726..254574 (+)	849	WP_248101223.1	glycosyltransferase family 2 protein	-
MZO21_RS01210 (MZO21_01205)	-	254579..256294 (+)	1716	WP_248101226.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 140 a.a. Molecular weight: 14452.60 Da Isoelectric Point: 9.0607

                                >NTDB_id=679560 MZO21_RS01195 WP_282441519.1 251293..251715(+) (pilA) [Acinetobacter portensis strain JNE5]

MKSVQKGFTLIELMIVVAIIGILAAIAIPAYQNYTKRAHVSEGLSLAGGAKAAVSEYFSANGQWPSNNTSAALPAAVSIS

GNAVSSVSINESLITVTYKTKVQSGATLLLQGASTSGGITWTCEAGPTMKTEFLPANCRQ

Nucleotide

Download Length: 423 bp

                                >NTDB_id=679560 MZO21_RS01195 WP_282441519.1 251293..251715(+) (pilA) [Acinetobacter portensis strain JNE5]

ATGAAATCAGTACAAAAGGGTTTTACTCTTATTGAATTGATGATCGTTGTAGCGATTATCGGTATTCTTGCAGCAATCGC

GATTCCTGCATACCAAAACTATACTAAACGTGCTCACGTTTCAGAAGGCTTGAGCCTTGCTGGTGGTGCTAAAGCTGCTG

TATCTGAATACTTTTCAGCAAATGGTCAGTGGCCATCTAATAATACCTCAGCAGCGCTTCCAGCTGCTGTTAGTATCTCA

GGAAATGCTGTGAGTTCTGTAAGCATCAATGAGTCTTTAATTACAGTAACATATAAAACAAAAGTTCAGTCAGGTGCTAC

ATTACTTCTTCAAGGTGCATCAACAAGTGGCGGTATTACTTGGACTTGTGAAGCTGGTCCTACTATGAAAACAGAATTCT

TGCCTGCAAACTGCCGTCAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(37-139)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Ralstonia pseudosolanacearum GMI1000	44.099	100	0.507
pilA2	Legionella pneumophila str. Paris	50	98.571	0.493
pilA2	Legionella pneumophila strain ERS1305867	50	98.571	0.493
pilE	Neisseria gonorrhoeae MS11	41.615	100	0.479
pilE	Neisseria gonorrhoeae strain FA1090	41.509	100	0.471
comP	Acinetobacter baylyi ADP1	43.448	100	0.45
pilA/pilA1	Eikenella corrodens VA1	38.71	100	0.429
pilA	Acinetobacter baumannii strain A118	41.549	100	0.421
pilA/pilAII	Pseudomonas stutzeri DSM 10701	40	100	0.414
pilA	Haemophilus influenzae 86-028NP	39.416	97.857	0.386
pilA	Vibrio campbellii strain DS40M4	36.986	100	0.386
pilA	Haemophilus influenzae Rd KW20	39.13	98.571	0.386
pilA	Vibrio cholerae C6706	37.063	100	0.379
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	37.063	100	0.379
pilA	Vibrio cholerae strain A1552	37.063	100	0.379
pilA	Pseudomonas aeruginosa PAK	33.775	100	0.364

Detailed information NTG0679560