Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | MY525_RS13550 | Genome accession | NZ_CP096018 |
| Coordinates | 2968622..2969656 (+) | Length | 344 a.a. |
| NCBI ID | WP_250656412.1 | Uniprot ID | - |
| Organism | Alkalimarinus coralli strain SCSIO 12817 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2963622..2974656
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY525_RS13530 | - | 2963651..2965615 (-) | 1965 | WP_250656409.1 | dynamin family protein | - |
| MY525_RS13535 | - | 2965996..2966583 (-) | 588 | WP_250656410.1 | YggT family protein | - |
| MY525_RS13540 | proC | 2966823..2967653 (-) | 831 | WP_250656411.1 | pyrroline-5-carboxylate reductase | - |
| MY525_RS13545 | - | 2967713..2968480 (-) | 768 | WP_338021695.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| MY525_RS13550 | pilT | 2968622..2969656 (+) | 1035 | WP_250656412.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| MY525_RS13555 | pilU | 2969719..2970840 (+) | 1122 | WP_250656413.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| MY525_RS13560 | polA | 2970970..2973714 (-) | 2745 | WP_250656414.1 | DNA polymerase I | - |
| MY525_RS13565 | - | 2973775..2974074 (+) | 300 | WP_250656415.1 | DUF2782 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38067.83 Da Isoelectric Point: 6.2435
>NTDB_id=679196 MY525_RS13550 WP_250656412.1 2968622..2969656(+) (pilT) [Alkalimarinus coralli strain SCSIO 12817]
MDITELLAFSAKQGASDLHLSSGLPPMIRVDGDVRRINLPPMEHKEVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDVAAVPRGLVLVTGPTGSGKSTTLAAMIDFINDNRYDHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPANEKAMVRSMLSESLQAVISQTLMKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGAQLGMQTLDQCL
TNLLQKGLITREAAREKAKMPENF
MDITELLAFSAKQGASDLHLSSGLPPMIRVDGDVRRINLPPMEHKEVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDVAAVPRGLVLVTGPTGSGKSTTLAAMIDFINDNRYDHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPANEKAMVRSMLSESLQAVISQTLMKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGAQLGMQTLDQCL
TNLLQKGLITREAAREKAKMPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=679196 MY525_RS13550 WP_250656412.1 2968622..2969656(+) (pilT) [Alkalimarinus coralli strain SCSIO 12817]
ATGGATATTACGGAACTATTAGCGTTTTCTGCCAAGCAAGGGGCTTCTGATTTACACCTGTCATCAGGCTTGCCTCCAAT
GATTCGTGTTGATGGCGATGTTCGGCGCATCAACTTACCGCCCATGGAACATAAAGAAGTGCACGCACTGATTTATGACA
TCATGAACGATAAGCAACGAAAAGATTTTGAAGAGTTTTTAGAAACCGATTTCTCGTTCGAAGTGCCCGGGGTTGCCCGA
TTCCGTGTTAACGCGTTTAACCAGAACCGAGGTGCAGGCGCTGTATTTCGTACCATCCCGTCCAAGGTGTTGACGATGGA
AGACCTGGGCATGGGGCAGGTGTTTAAAGATGTGGCTGCTGTACCACGAGGGTTGGTGCTGGTGACGGGGCCGACAGGGT
CAGGTAAATCAACAACTCTGGCGGCAATGATCGACTTTATCAACGACAACCGCTACGACCACATCCTGACAATTGAAGAT
CCGATAGAATTTGTGCACGAAAGTAAAAAGTGTCTCGTTAACCAACGGGAAGTGCACCGGGATACTCTCGGGTTTAACGA
AGCGTTACGATCGGCACTGCGTGAAGATCCAGATATTATTCTGGTTGGTGAGCTTCGAGACCTTGAGACTATCCGGCTGG
CGCTTACTGCCGCAGAAACCGGTCACTTGGTTTTTGGCACCTTGCACACCACATCTGCTGCCAAGACCATAGACCGGGTT
GTGGATGTATTCCCCGCCAACGAGAAGGCGATGGTTCGATCAATGCTCTCCGAGTCGCTACAAGCGGTTATCTCGCAGAC
GTTGATGAAGAAAGTAGGCGGTGGCCGAGTTGCTGCTCATGAGATTATGATCGGTACGCCCGCCATCAGAAACCTGATTC
GTGAAGATAAAGTGGCGCAGATGTACTCCGCGATTCAAACTGGCGCTCAGCTCGGTATGCAGACGTTGGATCAGTGCCTG
ACTAATCTGTTGCAGAAGGGCCTTATTACCCGTGAGGCCGCTCGTGAAAAAGCTAAAATGCCAGAGAATTTCTAA
ATGGATATTACGGAACTATTAGCGTTTTCTGCCAAGCAAGGGGCTTCTGATTTACACCTGTCATCAGGCTTGCCTCCAAT
GATTCGTGTTGATGGCGATGTTCGGCGCATCAACTTACCGCCCATGGAACATAAAGAAGTGCACGCACTGATTTATGACA
TCATGAACGATAAGCAACGAAAAGATTTTGAAGAGTTTTTAGAAACCGATTTCTCGTTCGAAGTGCCCGGGGTTGCCCGA
TTCCGTGTTAACGCGTTTAACCAGAACCGAGGTGCAGGCGCTGTATTTCGTACCATCCCGTCCAAGGTGTTGACGATGGA
AGACCTGGGCATGGGGCAGGTGTTTAAAGATGTGGCTGCTGTACCACGAGGGTTGGTGCTGGTGACGGGGCCGACAGGGT
CAGGTAAATCAACAACTCTGGCGGCAATGATCGACTTTATCAACGACAACCGCTACGACCACATCCTGACAATTGAAGAT
CCGATAGAATTTGTGCACGAAAGTAAAAAGTGTCTCGTTAACCAACGGGAAGTGCACCGGGATACTCTCGGGTTTAACGA
AGCGTTACGATCGGCACTGCGTGAAGATCCAGATATTATTCTGGTTGGTGAGCTTCGAGACCTTGAGACTATCCGGCTGG
CGCTTACTGCCGCAGAAACCGGTCACTTGGTTTTTGGCACCTTGCACACCACATCTGCTGCCAAGACCATAGACCGGGTT
GTGGATGTATTCCCCGCCAACGAGAAGGCGATGGTTCGATCAATGCTCTCCGAGTCGCTACAAGCGGTTATCTCGCAGAC
GTTGATGAAGAAAGTAGGCGGTGGCCGAGTTGCTGCTCATGAGATTATGATCGGTACGCCCGCCATCAGAAACCTGATTC
GTGAAGATAAAGTGGCGCAGATGTACTCCGCGATTCAAACTGGCGCTCAGCTCGGTATGCAGACGTTGGATCAGTGCCTG
ACTAATCTGTTGCAGAAGGGCCTTATTACCCGTGAGGCCGCTCGTGAAAAAGCTAAAATGCCAGAGAATTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
90.988 |
100 |
0.91 |
| pilT | Pseudomonas stutzeri DSM 10701 |
90.407 |
100 |
0.904 |
| pilT | Acinetobacter nosocomialis M2 |
84.012 |
100 |
0.84 |
| pilT | Acinetobacter baumannii D1279779 |
84.012 |
100 |
0.84 |
| pilT | Acinetobacter baumannii strain A118 |
84.012 |
100 |
0.84 |
| pilT | Acinetobacter baylyi ADP1 |
81.977 |
100 |
0.82 |
| pilT | Legionella pneumophila strain Lp02 |
75.74 |
98.256 |
0.744 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.74 |
98.256 |
0.744 |
| pilT | Neisseria gonorrhoeae MS11 |
67.536 |
100 |
0.677 |
| pilT | Neisseria meningitidis 8013 |
67.536 |
100 |
0.677 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.059 |
98.837 |
0.663 |
| pilT | Vibrio cholerae strain A1552 |
67.059 |
98.837 |
0.663 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.464 |
100 |
0.526 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.985 |
97.384 |
0.419 |
| pilU | Vibrio cholerae strain A1552 |
40.118 |
98.547 |
0.395 |
| pilU | Acinetobacter baylyi ADP1 |
39.306 |
100 |
0.395 |