Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   MYB88_RS08780 Genome accession   NZ_CP095786
Coordinates   1833061..1834041 (-) Length   326 a.a.
NCBI ID   WP_071986121.1    Uniprot ID   -
Organism   Escherichia fergusonii strain EF21JD053     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1828061..1839041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYB88_RS08750 (MYB88_08750) - 1828893..1829390 (+) 498 WP_223684723.1 SprT family zinc-dependent metalloprotease -
  MYB88_RS08755 (MYB88_08755) endA 1829485..1830192 (+) 708 WP_000286513.1 deoxyribonuclease I -
  MYB88_RS08760 (MYB88_08760) rsmE 1830272..1831003 (+) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  MYB88_RS08765 (MYB88_08765) gshB 1831016..1831966 (+) 951 WP_000593298.1 glutathione synthase -
  MYB88_RS08770 (MYB88_08770) - 1832075..1832638 (+) 564 WP_002431379.1 YqgE/AlgH family protein -
  MYB88_RS08775 (MYB88_08775) ruvX 1832638..1833054 (+) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  MYB88_RS08780 (MYB88_08780) pilT 1833061..1834041 (-) 981 WP_071986121.1 type IV pilus twitching motility protein PilT Machinery gene
  MYB88_RS08785 (MYB88_08785) yggS 1834059..1834763 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  MYB88_RS08790 (MYB88_08790) yggT 1834781..1835347 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  MYB88_RS08795 (MYB88_08795) yggU 1835344..1835634 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  MYB88_RS08800 (MYB88_08800) - 1835642..1836235 (+) 594 WP_182258112.1 XTP/dITP diphosphatase -
  MYB88_RS08805 (MYB88_08805) hemW 1836228..1837364 (+) 1137 WP_223684724.1 radical SAM family heme chaperone HemW -
  MYB88_RS08810 (MYB88_08810) - 1837678..1838664 (+) 987 WP_223684725.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35982.18 Da        Isoelectric Point: 5.6101

>NTDB_id=678467 MYB88_RS08780 WP_071986121.1 1833061..1834041(-) (pilT) [Escherichia fergusonii strain EF21JD053]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSYCPQLEQLGAPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=678467 MYB88_RS08780 WP_071986121.1 1833061..1834041(-) (pilT) [Escherichia fergusonii strain EF21JD053]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTGGAAGAGCTATTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGTTAGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCGTTACGGTTGTTACCTTCGTATTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGATATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGAAGTGGAAAAT
CTACCACGCTGGCAGCGATGGTTGGTTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGGTGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGCATGACGTTCGCATCGGGATTGCG
TGCCGCATTGCGGGAAGATCCCGATGTGATATTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACCG
CGGCAGAAACCGGACATCTGGTGCTGGCAACCTTGCATACGCGTGGTGCCGCGCAGGCGGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCCGGGAGCTTGCGGGCGGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGATTAACACACCCGCGGTGGGGAATTTGATACGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACTGGGCAGCAGGTGGGGATGTTGACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.847

100

0.5
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.847

100

0.5
  pilT Neisseria meningitidis 8013

49.085

100

0.494
  pilT Neisseria gonorrhoeae MS11

48.78

100

0.491
  pilT Acinetobacter baylyi ADP1

47.095

100

0.472
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain Lp02

45.566

100

0.457
  pilT Legionella pneumophila strain ERS1305867

45.566

100

0.457
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

40.379

97.239

0.393
  pilU Pseudomonas stutzeri DSM 10701

37.273

100

0.377
  pilU Acinetobacter baylyi ADP1

37.267

98.773

0.368