Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG234_RS26380 Genome accession   NZ_CP109513
Coordinates   5886615..5887409 (-) Length   264 a.a.
NCBI ID   WP_026171816.1    Uniprot ID   A0ABY6PP80
Organism   Streptomyces sp. NBC_01420     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5881615..5892409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG234_RS26365 (OG234_26375) - 5881918..5882562 (+) 645 WP_405763737.1 GNAT family N-acetyltransferase -
  OG234_RS26370 (OG234_26380) - 5882623..5884479 (+) 1857 WP_405762026.1 IucA/IucC family protein -
  OG234_RS26375 (OG234_26385) - 5884530..5886500 (+) 1971 WP_405762028.1 ATP-dependent DNA helicase -
  OG234_RS26380 (OG234_26390) dinR/lexA 5886615..5887409 (-) 795 WP_026171816.1 transcriptional repressor LexA Regulator
  OG234_RS26385 (OG234_26395) nrdR 5887917..5888429 (+) 513 WP_018520799.1 transcriptional regulator NrdR -
  OG234_RS26390 (OG234_26400) - 5888594..5891497 (+) 2904 WP_405762030.1 vitamin B12-dependent ribonucleotide reductase -
  OG234_RS26395 (OG234_26405) - 5891564..5892100 (-) 537 WP_132903973.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28592.36 Da        Isoelectric Point: 6.9854

>NTDB_id=678211 OG234_RS26380 WP_026171816.1 5886615..5887409(-) (dinR/lexA) [Streptomyces sp. NBC_01420]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=678211 OG234_RS26380 WP_026171816.1 5886615..5887409(-) (dinR/lexA) [Streptomyces sp. NBC_01420]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGCCCGGAGCCCGGGCGCCCAGCGCGCTCGCTCCCCGGACGACCTCCCGGAATCCGGG
CCGACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGCGGCTACCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTCTCCAGCACCTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTCCGCCGCGACCCGCACCGCCCCCGGGCCTACGAGGTGCGCGGCTCCGACCAGCCGAGCACCCAGCCGA
CGGACACCACGGGCAAGCCCGCCGCCTCGTACGTGCCTCTGGTCGGCCGGATCGCCGCAGGTGGGCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTCTTCGTGCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCGGCCATCTGTGACGGCGACTGGGTCACCGTGCGACGCCAGCCCGTCGCGGAGAACGGGGACATCG
TGGCCGCCATGCTGGACGGTGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTTCCCCACAAC
GCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371