Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OH790_RS25780 Genome accession   NZ_CP109349
Coordinates   5727210..5728235 (+) Length   341 a.a.
NCBI ID   WP_202201463.1    Uniprot ID   A0ABQ3THX6
Organism   Streptomyces sp. NBC_01568     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5722210..5733235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH790_RS25760 (OH790_25705) - 5722501..5723922 (-) 1422 WP_405814533.1 GH1 family beta-glucosidase -
  OH790_RS25765 (OH790_25710) - 5723919..5724743 (-) 825 WP_202201460.1 carbohydrate ABC transporter permease -
  OH790_RS25770 (OH790_25715) - 5724740..5725744 (-) 1005 WP_202201461.1 carbohydrate ABC transporter permease -
  OH790_RS25775 (OH790_25720) - 5725752..5727107 (-) 1356 WP_405814531.1 extracellular solute-binding protein -
  OH790_RS25780 (OH790_25725) cytR 5727210..5728235 (+) 1026 WP_202201463.1 LacI family DNA-binding transcriptional regulator Regulator
  OH790_RS25790 (OH790_25735) orn 5728530..5729132 (-) 603 WP_202201464.1 oligoribonuclease -
  OH790_RS25795 (OH790_25740) - 5729238..5730410 (-) 1173 WP_202201465.1 helix-turn-helix domain-containing protein -
  OH790_RS25800 - 5730787..5731230 (-) 444 WP_202201466.1 hypothetical protein -
  OH790_RS25805 (OH790_25750) - 5731554..5732087 (+) 534 WP_150261838.1 universal stress protein -
  OH790_RS25810 (OH790_25755) - 5732269..5732835 (+) 567 WP_202201467.1 acetate uptake transporter -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36132.12 Da        Isoelectric Point: 6.4008

>NTDB_id=674755 OH790_RS25780 WP_202201463.1 5727210..5728235(+) (cytR) [Streptomyces sp. NBC_01568]
MNGHGRSGGRPTLEEVAARAGVGRGTVSRVINGSSKVSEHTRVAVEAAVAELGYVPNRAARALAANRTDAIALVIPEPEA
RFFAEPYFSEVVRGVGAELADTEVQLVLTLAGSDRERRRLAQYLSGHRVDGVLLVSVHAGDPLPELLAELGIPTVISGRR
SAAETLPCVDSDNLAGAAEAVRHLLDRGRGTIATITGPLDVYGAQCRLDGYRQALAAAGHPVDELLIAVGDFTEEGGRRA
MRELLERRPALDAVFAASDVMAAGARRELRAAGLRIPRDVALVGFDDSVVARHMDPPLTSVRQPIEEMGRTMTRMLLGRI
AGEAGEAAAVLPNRLVVRESS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=674755 OH790_RS25780 WP_202201463.1 5727210..5728235(+) (cytR) [Streptomyces sp. NBC_01568]
ATGAACGGGCACGGGCGCAGTGGGGGACGACCGACCCTGGAGGAGGTCGCGGCGCGCGCCGGAGTCGGGCGCGGCACGGT
CTCCCGGGTGATCAACGGATCCTCCAAGGTCAGCGAGCACACCAGGGTCGCCGTCGAGGCGGCCGTGGCCGAGCTCGGGT
ACGTACCGAACCGCGCCGCGCGCGCCCTCGCCGCCAACCGGACCGACGCCATCGCCCTCGTGATCCCCGAGCCCGAGGCC
CGCTTCTTCGCCGAGCCCTACTTCTCCGAAGTGGTCCGCGGGGTCGGTGCCGAGCTCGCCGACACCGAGGTCCAGCTCGT
CCTCACCCTGGCGGGCAGCGACCGCGAGCGCCGCCGCCTCGCCCAGTACCTGTCCGGGCACCGCGTCGACGGGGTGCTGC
TCGTCTCCGTCCACGCCGGGGACCCGCTGCCGGAGCTGCTGGCCGAGCTCGGCATCCCGACGGTGATCAGCGGCCGCCGT
TCCGCCGCCGAGACCCTTCCCTGCGTGGACTCCGACAACCTGGCGGGTGCGGCCGAGGCCGTGCGCCACCTCCTCGACCG
GGGCCGGGGCACGATCGCCACGATCACCGGCCCGCTGGACGTGTACGGGGCCCAGTGCCGCCTCGACGGCTACCGGCAGG
CCCTGGCCGCCGCGGGGCACCCCGTCGACGAGCTGCTGATCGCGGTCGGCGACTTCACCGAGGAGGGCGGCCGGCGGGCC
ATGCGGGAACTGCTGGAGCGCCGCCCCGCGCTCGACGCCGTCTTCGCCGCCTCGGACGTCATGGCGGCGGGCGCCCGGCG
GGAGCTGCGCGCGGCCGGCCTGCGGATCCCGCGGGACGTGGCGCTGGTGGGTTTCGACGACTCGGTGGTGGCCCGGCACA
TGGACCCGCCGCTGACCAGCGTCCGGCAGCCGATCGAGGAGATGGGCCGGACCATGACGCGGATGCTGCTGGGGAGAATA
GCGGGGGAGGCGGGCGAGGCGGCCGCCGTCCTGCCGAACCGGCTGGTGGTCCGGGAGTCGTCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)

Bacterial regulatory proteins, lacI family (LacI)

(12-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.462

99.12

0.381
  cytR Vibrio parahaemolyticus RIMD 2210633

37.278

99.12

0.37