Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   MOV92_RS05665 Genome accession   NZ_CP093547
Coordinates   1354575..1355612 (+) Length   345 a.a.
NCBI ID   WP_057941936.1    Uniprot ID   -
Organism   Lysobacter gummosus strain 10.1.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349575..1360612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOV92_RS05640 (MOV92_05640) - 1350005..1350949 (+) 945 WP_057941932.1 triacylglycerol lipase -
  MOV92_RS05645 (MOV92_05645) - 1350953..1351948 (+) 996 WP_057941933.1 lipase secretion chaperone -
  MOV92_RS05650 (MOV92_05650) - 1351962..1352435 (-) 474 WP_057941934.1 DUF4426 domain-containing protein -
  MOV92_RS05655 (MOV92_05655) proC 1352432..1353268 (-) 837 WP_057941935.1 pyrroline-5-carboxylate reductase -
  MOV92_RS05660 (MOV92_05660) - 1353688..1354362 (-) 675 WP_057945300.1 YggS family pyridoxal phosphate-dependent enzyme -
  MOV92_RS05665 (MOV92_05665) pilT 1354575..1355612 (+) 1038 WP_057941936.1 type IV pilus twitching motility protein PilT Machinery gene
  MOV92_RS05670 (MOV92_05670) pilU 1355733..1356899 (+) 1167 WP_057941937.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38552.35 Da        Isoelectric Point: 6.7809

>NTDB_id=665187 MOV92_RS05665 WP_057941936.1 1354575..1355612(+) (pilT) [Lysobacter gummosus strain 10.1.1]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDFEEFLEVDFSFEIPGLAR
FRVNAFNQNRGAGAVFRTIPSEVLSLEDLGCPPIFRQLIEQPQGLILVTGPTGSGKSTTLAAMIDHINKNEYAHILSVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTVDRI
IDVFPSGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGIPAIRNLIREDKVAQMYSSIQTGQAHGMMTLDQHL
QDLVKRGMILRPQAREYAKDKRLFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=665187 MOV92_RS05665 WP_057941936.1 1354575..1355612(+) (pilT) [Lysobacter gummosus strain 10.1.1]
ATGGACATCGCCGAACTTTTGGCGTTCTCGGTTAAGAACAAAGCATCCGACTTGCATCTTTCGGCGGGCCTGCCGCCGAT
GATCCGCGTCGATGGCGACGTGCGCCGGATCAACATCCCGGCCCTGGACCACAAACAGGTCCACGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGGCGCGACTTCGAAGAATTCCTCGAGGTCGACTTCTCATTCGAGATCCCCGGCCTGGCGCGT
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGTACCATTCCGTCCGAAGTGCTGTCGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTAATCGAACAGCCGCAGGGCTTGATCTTGGTGACCGGCCCGACCGGCT
CGGGCAAATCGACCACGCTCGCGGCGATGATCGATCACATCAACAAGAACGAGTACGCGCACATTCTCTCGGTCGAAGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCATCGCGACACGCACGGCTTCAACGA
GGCCCTGCGCTCGGCCCTGCGCGAAGACCCCGACTACATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCCTCGGCGGCCAAGACGGTGGACCGAATC
ATCGACGTGTTCCCCTCCGGTGAAAAGCCGATGGTGCGCTCGATGCTGTCGGAATCGTTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAAGTCGGCGGCGGCCGTACCGCGGCCTGGGAAATCATGGTGGGCATCCCGGCCATCCGTAACCTGATCC
GCGAAGACAAGGTCGCGCAGATGTATTCGTCGATCCAGACCGGTCAGGCCCACGGCATGATGACCCTGGACCAGCATCTG
CAGGACTTGGTCAAGCGCGGCATGATCCTGCGTCCGCAGGCGCGCGAATACGCCAAGGACAAGCGACTGTTCGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

78.779

99.71

0.786
  pilT Acinetobacter baumannii D1279779

78.779

99.71

0.786
  pilT Acinetobacter baumannii strain A118

78.779

99.71

0.786
  pilT Acinetobacter baylyi ADP1

77.907

99.71

0.777
  pilT Pseudomonas stutzeri DSM 10701

77.616

99.71

0.774
  pilT Pseudomonas aeruginosa PAK

77.286

98.261

0.759
  pilT Legionella pneumophila strain Lp02

74.128

99.71

0.739
  pilT Legionella pneumophila strain ERS1305867

74.128

99.71

0.739
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.213

95.362

0.67
  pilT Vibrio cholerae strain A1552

70.213

95.362

0.67
  pilT Neisseria meningitidis 8013

66.276

98.841

0.655
  pilT Neisseria gonorrhoeae MS11

65.982

98.841

0.652
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.986

100

0.49
  pilU Pseudomonas stutzeri DSM 10701

40.118

98.261

0.394
  pilU Acinetobacter baylyi ADP1

39.706

98.551

0.391
  pilU Vibrio cholerae strain A1552

40.308

94.203

0.38