Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG457_RS21385 Genome accession   NZ_CP108554
Coordinates   4734934..4735533 (-) Length   199 a.a.
NCBI ID   WP_327384062.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4729934..4740533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG457_RS21365 (OG457_21360) - 4730875..4731606 (-) 732 WP_327388529.1 SigE family RNA polymerase sigma factor -
  OG457_RS21370 (OG457_21365) - 4731820..4732893 (-) 1074 WP_327384059.1 aspartate-semialdehyde dehydrogenase -
  OG457_RS21375 (OG457_21370) - 4732890..4734164 (-) 1275 WP_327384060.1 aspartate kinase -
  OG457_RS21380 (OG457_21375) - 4734294..4734941 (-) 648 WP_327384061.1 DUF5063 domain-containing protein -
  OG457_RS21385 (OG457_21380) recR 4734934..4735533 (-) 600 WP_327384062.1 recombination mediator RecR Machinery gene
  OG457_RS21390 (OG457_21385) - 4735568..4735912 (-) 345 WP_094744798.1 YbaB/EbfC family nucleoid-associated protein -
  OG457_RS21395 (OG457_21390) - 4736182..4736928 (+) 747 WP_327384063.1 SLATT domain-containing protein -
  OG457_RS21400 (OG457_21395) - 4737008..4737658 (-) 651 WP_030010934.1 hypothetical protein -
  OG457_RS21405 (OG457_21400) - 4737745..4738410 (-) 666 WP_327384064.1 GntR family transcriptional regulator -
  OG457_RS21410 (OG457_21405) - 4738567..4739730 (+) 1164 WP_327388530.1 IS701 family transposase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 5.0142

>NTDB_id=662907 OG457_RS21385 WP_327384062.1 4734934..4735533(-) (recR) [Streptomyces sp. NBC_01207]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=662907 OG457_RS21385 WP_327384062.1 4734934..4735533(-) (recR) [Streptomyces sp. NBC_01207]
TTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCACAGGAGGAGCGGTGCGGCATCTGCCGCGACCCGCGCCGGGACACCACGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTCGCGGTCGAGCGGACGCGCGAGTTCCGGGGGAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGCCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGACTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472