Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG226_RS49250 Genome accession   NZ_CP108463
Coordinates   11085401..11086072 (+) Length   223 a.a.
NCBI ID   WP_328686056.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01261     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 11080401..11091072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG226_RS49240 (OG226_49175) - 11080936..11081880 (-) 945 WP_328686054.1 aldo/keto reductase -
  OG226_RS49245 (OG226_49180) - 11082174..11085188 (+) 3015 WP_329352929.1 hypothetical protein -
  OG226_RS49250 (OG226_49185) dinR/lexA 11085401..11086072 (+) 672 WP_328686056.1 transcriptional repressor LexA Regulator
  OG226_RS49255 (OG226_49190) - 11086447..11087271 (+) 825 WP_328686057.1 SDR family oxidoreductase -
  OG226_RS49260 (OG226_49195) - 11087660..11088256 (-) 597 WP_328686058.1 TetR/AcrR family transcriptional regulator -
  OG226_RS49265 (OG226_49200) - 11088407..11089015 (+) 609 WP_328686059.1 hypothetical protein -
  OG226_RS49270 (OG226_49205) - 11089592..11089852 (-) 261 WP_328686060.1 hypothetical protein -
  OG226_RS49275 (OG226_49215) - 11090347..11090724 (-) 378 WP_328686061.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24137.53 Da        Isoelectric Point: 5.6501

>NTDB_id=661147 OG226_RS49250 WP_328686056.1 11085401..11086072(+) (dinR/lexA) [Streptomyces sp. NBC_01261]
MDNNMSARRGRPPGPRAAEGQLTPRQSAIVSYIREAVGRQGYPPSMREIGEAVHLASTSSVAHQLMALESKGVLYRDPHR
PRAYQVRPTWAPELDGRTGTQVDVPLVGRIAAGAPLLAEEMIEDVYPLPRQVVGDGDLFALTVVGDSMLGAAICDGDIVT
VRRQDSADHGDIVAALLDDEATVKVLRREDGQVWLMPRNPAYEPIPGDHAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=661147 OG226_RS49250 WP_328686056.1 11085401..11086072(+) (dinR/lexA) [Streptomyces sp. NBC_01261]
ATGGACAACAACATGTCGGCCCGCCGGGGCCGTCCGCCGGGCCCCCGGGCGGCCGAGGGGCAGTTGACGCCCCGCCAGTC
GGCGATCGTCAGCTACATCCGGGAGGCCGTCGGCCGGCAGGGTTATCCGCCGTCGATGCGTGAGATCGGCGAGGCCGTGC
ACCTGGCCAGTACCTCGTCCGTCGCGCACCAGCTCATGGCCCTGGAGAGCAAAGGCGTCCTCTACCGGGACCCGCACCGT
CCCCGCGCCTACCAGGTCCGGCCCACGTGGGCGCCCGAGCTGGACGGCAGAACCGGGACGCAGGTCGACGTCCCCCTGGT
CGGGCGTATCGCGGCCGGTGCGCCCCTGCTGGCCGAGGAGATGATCGAGGACGTCTACCCGCTGCCGCGCCAAGTCGTGG
GCGACGGGGATCTGTTCGCCCTGACCGTCGTCGGGGACTCCATGCTGGGCGCCGCGATCTGCGACGGCGACATCGTGACC
GTACGACGCCAGGACAGTGCCGACCACGGCGACATCGTCGCCGCGCTCCTGGACGACGAGGCCACCGTGAAGGTGCTGCG
CCGCGAGGACGGGCAGGTGTGGCTGATGCCACGCAACCCCGCCTACGAGCCGATCCCCGGCGACCACGCACAGATCCTCG
GCAAGGTCGTCGGGGTCCTGCGCCTGCTGTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.798

91.031

0.426