Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   FXN80_RS18645 Genome accession   NZ_CP092460
Coordinates   4207212..4208225 (-) Length   337 a.a.
NCBI ID   WP_049842457.1    Uniprot ID   -
Organism   Dickeya fangzhongdai strain AP6     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4202212..4213225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN80_RS18620 (FXN80_18620) - 4202464..4203375 (+) 912 WP_049842455.1 PucR family transcriptional regulator -
  FXN80_RS18625 (FXN80_18625) codA 4203378..4204628 (+) 1251 WP_161130199.1 cytosine deaminase -
  FXN80_RS18630 (FXN80_18630) - 4205053..4205796 (-) 744 WP_049853844.1 hypothetical protein -
  FXN80_RS18635 (FXN80_18635) - 4205781..4206176 (-) 396 WP_049853843.1 hypothetical protein -
  FXN80_RS18640 (FXN80_18640) - 4206876..4207067 (-) 192 WP_072093512.1 hypothetical protein -
  FXN80_RS18645 (FXN80_18645) pilT 4207212..4208225 (-) 1014 WP_049842457.1 type IV pilus twitching motility protein PilT Machinery gene
  FXN80_RS18650 (FXN80_18650) - 4208247..4208981 (+) 735 WP_038666089.1 YggS family pyridoxal phosphate-dependent enzyme -
  FXN80_RS18655 (FXN80_18655) proC 4209015..4209836 (+) 822 WP_039693681.1 pyrroline-5-carboxylate reductase -
  FXN80_RS18660 (FXN80_18660) - 4209880..4210434 (+) 555 WP_038920114.1 YggT family protein -
  FXN80_RS18665 (FXN80_18665) yggU 4210431..4210721 (+) 291 WP_038920115.1 DUF167 family protein YggU -
  FXN80_RS18670 (FXN80_18670) - 4210840..4211433 (+) 594 WP_038920116.1 XTP/dITP diphosphatase -
  FXN80_RS18675 (FXN80_18675) hemW 4211426..4212565 (+) 1140 WP_039693685.1 radical SAM family heme chaperone HemW -
  FXN80_RS18680 (FXN80_18680) - 4212697..4212825 (+) 129 WP_038666077.1 entericidin A/B family lipoprotein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36834.01 Da        Isoelectric Point: 6.7155

>NTDB_id=657774 FXN80_RS18645 WP_049842457.1 4207212..4208225(-) (pilT) [Dickeya fangzhongdai strain AP6]
MDVSEWVRSSVKQNVSDLHLCSGHPPVWRIDGQLVADAAQPPLHNDELEQWCGSWLEPACEQQLRQSGQTDCALTLPEGQ
RLRANLFMQRHGLSAALRLIPSHQPDLQALGAPPVVAELADRPDGLILVTGATGSGKSTTLAAMIASLNQRRARHIITLE
DPIEFLHVSQRCLIQQREIGRHSDAFASALRAALREDPDVLLLGELRDSETIRLALTAAETGHLVLATLHTRRAVQSVDR
LVDVFPAEEKAFVRTQLAASLQAVVAQKLLSGAQGGRVALFEVLLATPAVSNLIREGKTHQLPSLLQTGGQVGMQTFEQS
YQQRCREGRLRPEMNAG

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=657774 FXN80_RS18645 WP_049842457.1 4207212..4208225(-) (pilT) [Dickeya fangzhongdai strain AP6]
ATGGATGTGAGTGAATGGGTGCGGTCTAGTGTAAAACAGAATGTGTCCGATCTGCACCTGTGCAGCGGTCATCCGCCGGT
TTGGCGTATCGACGGGCAACTGGTGGCGGATGCTGCGCAGCCGCCGTTGCACAACGACGAGCTGGAGCAGTGGTGCGGCA
GCTGGCTGGAACCAGCCTGCGAGCAGCAACTGCGGCAAAGCGGGCAGACCGACTGCGCGCTGACGCTGCCGGAGGGTCAG
CGGTTACGGGCCAATCTGTTTATGCAGCGCCACGGCCTGTCGGCGGCGCTGCGCCTGATCCCGTCACATCAGCCGGATCT
ACAGGCGTTGGGCGCGCCGCCGGTGGTAGCGGAGCTGGCCGATCGTCCCGATGGTCTGATTCTGGTGACCGGCGCAACCG
GCAGCGGTAAATCCACCACGCTGGCGGCGATGATCGCCTCGCTCAATCAACGCCGTGCGCGCCACATTATTACGCTGGAA
GACCCGATTGAGTTCCTGCATGTCAGCCAACGCTGTCTGATTCAACAGCGGGAGATTGGCCGTCATAGCGATGCGTTCGC
CAGTGCTCTGCGGGCGGCGCTGCGCGAAGACCCGGACGTGCTGCTGCTCGGCGAGTTGCGCGACAGCGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGTCATCTGGTGCTGGCGACGCTGCATACCCGGCGGGCGGTGCAGTCGGTGGACCGG
CTGGTGGATGTCTTTCCCGCCGAGGAGAAAGCGTTTGTCCGCACGCAACTGGCCGCCAGTTTGCAGGCGGTGGTGGCGCA
GAAACTGTTGTCGGGCGCGCAAGGCGGGCGCGTGGCGCTGTTTGAAGTACTGCTCGCCACCCCGGCGGTCAGCAACCTGA
TCCGCGAAGGTAAAACCCACCAGTTGCCGAGCCTGCTGCAAACCGGCGGTCAGGTCGGCATGCAGACCTTTGAACAGAGT
TACCAGCAGCGATGCCGGGAGGGGAGGCTGCGGCCTGAAATGAATGCCGGTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.305

97.329

0.49
  pilT Vibrio cholerae strain A1552

50.305

97.329

0.49
  pilT Neisseria meningitidis 8013

48.955

99.407

0.487
  pilT Pseudomonas stutzeri DSM 10701

49.394

97.923

0.484
  pilT Neisseria gonorrhoeae MS11

48.802

99.11

0.484
  pilT Pseudomonas aeruginosa PAK

48.649

98.813

0.481
  pilT Acinetobacter baylyi ADP1

49.085

97.329

0.478
  pilT Acinetobacter baumannii D1279779

47.748

98.813

0.472
  pilT Acinetobacter nosocomialis M2

47.748

98.813

0.472
  pilT Acinetobacter baumannii strain A118

47.748

98.813

0.472
  pilT Legionella pneumophila strain ERS1305867

49.53

94.659

0.469
  pilT Legionella pneumophila strain Lp02

49.53

94.659

0.469
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.455

94.659

0.43
  pilU Pseudomonas stutzeri DSM 10701

37.425

99.11

0.371
  pilU Vibrio cholerae strain A1552

38.58

96.142

0.371
  pilU Acinetobacter baylyi ADP1

37.888

95.549

0.362