Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG446_RS26525 Genome accession   NZ_CP108100
Coordinates   5850113..5850763 (-) Length   216 a.a.
NCBI ID   WP_328896376.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5845113..5855763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS26505 (OG446_26520) atpD 5845446..5846888 (+) 1443 WP_328896374.1 F0F1 ATP synthase subunit beta -
  OG446_RS26510 (OG446_26525) - 5846998..5847372 (+) 375 WP_148020742.1 F0F1 ATP synthase subunit epsilon -
  OG446_RS26515 (OG446_26530) - 5847513..5847959 (+) 447 WP_328898422.1 DUF2550 domain-containing protein -
  OG446_RS26520 (OG446_26535) - 5848059..5849933 (-) 1875 WP_328896375.1 glycoside hydrolase family 18 chitinase -
  OG446_RS26525 (OG446_26540) vraR 5850113..5850763 (-) 651 WP_328896376.1 response regulator transcription factor Regulator
  OG446_RS26530 (OG446_26545) - 5850770..5851957 (-) 1188 WP_328896377.1 histidine kinase -
  OG446_RS26535 (OG446_26550) - 5852109..5852681 (+) 573 WP_328896378.1 hypothetical protein -
  OG446_RS26540 (OG446_26555) - 5852710..5853282 (-) 573 WP_328896379.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG446_RS26545 (OG446_26560) - 5853287..5854045 (-) 759 WP_328896380.1 ABC transporter permease -
  OG446_RS26550 (OG446_26565) - 5854069..5854851 (-) 783 WP_328896381.1 ATP-binding cassette domain-containing protein -
  OG446_RS26555 (OG446_26570) - 5854933..5855568 (+) 636 WP_328896382.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23016.57 Da        Isoelectric Point: 4.9911

>NTDB_id=653625 OG446_RS26525 WP_328896376.1 5850113..5850763(-) (vraR) [Streptomyces sp. NBC_00236]
MTIRVLVAEDQSAVRAGLVLILGSAPDIKVVGEAGDGEEAVRLARELRPDLVLMDVQMPRLDGVSATRQVVAERLADVLV
LTTFDLDEYVFGALRAGASGFLLKDTEARGLLDAVRTVARGEGLIAPSVTRRLIAEFAGTTPHGSPEGPDRAVLDTLTRR
EREVLGCLGEGMSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV

Nucleotide


Download         Length: 651 bp        

>NTDB_id=653625 OG446_RS26525 WP_328896376.1 5850113..5850763(-) (vraR) [Streptomyces sp. NBC_00236]
ATGACCATCAGGGTTCTGGTCGCCGAGGACCAGTCGGCCGTACGGGCGGGGCTGGTCCTCATCCTGGGCAGCGCGCCGGA
CATCAAGGTGGTCGGAGAGGCCGGTGACGGCGAGGAGGCCGTCCGGCTGGCCCGCGAACTGCGCCCGGATCTGGTGCTGA
TGGACGTCCAGATGCCCCGGCTGGACGGGGTGTCCGCGACGAGGCAGGTGGTGGCGGAGCGGCTGGCGGACGTGCTGGTG
CTGACGACGTTCGACCTGGACGAGTACGTGTTCGGGGCGCTGCGGGCCGGGGCGTCGGGCTTTCTGCTGAAGGACACCGA
GGCGCGCGGGCTGCTCGACGCGGTCCGCACGGTGGCGCGCGGCGAGGGCCTGATCGCCCCGTCGGTGACGCGCCGGCTGA
TCGCGGAGTTCGCGGGAACCACGCCGCACGGGTCGCCGGAGGGCCCCGACCGGGCGGTCCTGGACACGCTCACCCGTCGC
GAGCGCGAGGTGCTCGGCTGCCTCGGGGAGGGGATGTCGAACGCGGAGATCGCGGTGCGTCTTTCGATGGCCGAGGCAAC
GGTGAAGACGCACGTCAGCCGGTTGCTGGGGAAGCTGGAGCTGCGCAGCAGGGTTCAGGCGGCAGTGCTGGCACAGGAGT
TGGGCGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

39.819

100

0.407