Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | LVJ85_RS08625 | Genome accession | NZ_CP091522 |
| Coordinates | 1742416..1743549 (+) | Length | 377 a.a. |
| NCBI ID | WP_244738887.1 | Uniprot ID | - |
| Organism | Neisseria sp. Dent CA1/247 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1737416..1748549
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVJ85_RS08615 (LVJ85_08615) | - | 1740926..1741246 (-) | 321 | WP_085363088.1 | DUF5339 family protein | - |
| LVJ85_RS08620 (LVJ85_08620) | - | 1741559..1742263 (-) | 705 | WP_244738884.1 | 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | - |
| LVJ85_RS08625 (LVJ85_08625) | pilU | 1742416..1743549 (+) | 1134 | WP_244738887.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LVJ85_RS08630 (LVJ85_08630) | glyA | 1743743..1744993 (-) | 1251 | WP_244738888.1 | serine hydroxymethyltransferase | - |
| LVJ85_RS08635 (LVJ85_08635) | recN | 1745387..1747054 (+) | 1668 | WP_244738889.1 | DNA repair protein RecN | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 42370.47 Da Isoelectric Point: 6.0101
>NTDB_id=652063 LVJ85_RS08625 WP_244738887.1 1742416..1743549(+) (pilU) [Neisseria sp. Dent CA1/247]
MVENENPLPAKEEIYSLLRTLNKYKGSDLFITANFPPAMKLDGKITRINETPLTPERCMEIAFSIMGPKQMEEFTNTNEC
NFAISLPDTSRFRVNAMVQRGATALVFRTITSNIPKFENLNLPPVLKQIAMQKRGLVIFVGGTGSGKSTSLASMIDYRNE
NSFDHIITIEDPIEFVHSHKNCIITQREVGVDTENWFAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLH
ANSTNQALDRIINFFPEERRTQLLTDLSLNLQAFISQRLIPREGGKGRVAAVEVLLNSPLIAELIHNGDVHSIKEIMKKS
QSLGMQTFDQALYELYESGHISFQDAIKNADSAHDLHLDIQLRSRRAQNAGPDLELI
MVENENPLPAKEEIYSLLRTLNKYKGSDLFITANFPPAMKLDGKITRINETPLTPERCMEIAFSIMGPKQMEEFTNTNEC
NFAISLPDTSRFRVNAMVQRGATALVFRTITSNIPKFENLNLPPVLKQIAMQKRGLVIFVGGTGSGKSTSLASMIDYRNE
NSFDHIITIEDPIEFVHSHKNCIITQREVGVDTENWFAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLH
ANSTNQALDRIINFFPEERRTQLLTDLSLNLQAFISQRLIPREGGKGRVAAVEVLLNSPLIAELIHNGDVHSIKEIMKKS
QSLGMQTFDQALYELYESGHISFQDAIKNADSAHDLHLDIQLRSRRAQNAGPDLELI
Nucleotide
Download Length: 1134 bp
>NTDB_id=652063 LVJ85_RS08625 WP_244738887.1 1742416..1743549(+) (pilU) [Neisseria sp. Dent CA1/247]
ATGGTTGAAAACGAAAACCCTTTACCCGCAAAAGAAGAAATCTATTCACTGCTGAGAACCTTAAACAAATACAAAGGCTC
CGATCTCTTCATCACAGCCAATTTTCCGCCGGCCATGAAATTGGACGGCAAAATCACCCGCATCAACGAAACACCGCTCA
CGCCCGAGCGTTGTATGGAAATTGCGTTCTCCATCATGGGCCCCAAACAGATGGAAGAATTTACCAATACCAACGAATGC
AACTTCGCCATCAGCCTGCCCGACACCAGCCGTTTCCGTGTCAACGCCATGGTTCAGCGCGGTGCAACGGCTTTGGTATT
CCGTACCATTACCAGCAACATCCCCAAATTTGAAAACCTCAATCTGCCGCCGGTTTTAAAACAAATCGCCATGCAGAAAC
GCGGCTTGGTGATTTTTGTCGGCGGCACGGGCTCGGGTAAATCGACCTCGCTGGCCTCTATGATCGACTACCGCAACGAA
AACAGCTTCGACCACATCATCACCATCGAAGATCCGATCGAATTCGTACACAGCCACAAAAACTGCATCATTACCCAGCG
CGAAGTCGGCGTGGACACCGAAAACTGGTTTGCCGCGCTGAAAAACACGCTGCGCCAAGCCCCCGACGTGATTTTGATCG
GTGAGATCCGCGACCGCGAAACCATGGATTACGCCATTGCCTTCGCCGAAACCGGCCACTTGTGCATGGCCACGCTGCAC
GCCAACAGCACCAACCAAGCACTCGACCGCATCATCAACTTCTTCCCGGAAGAACGCCGCACCCAGCTGCTTACCGACCT
TTCGCTCAACCTGCAAGCCTTCATTTCACAGCGCTTGATTCCGCGCGAAGGCGGCAAAGGCCGTGTGGCCGCCGTGGAAG
TGCTACTGAATTCGCCTCTGATTGCCGAATTAATCCACAACGGCGACGTGCATTCCATTAAAGAAATCATGAAGAAATCG
CAAAGCTTGGGCATGCAAACGTTCGACCAAGCGTTATACGAACTGTATGAAAGCGGGCACATCAGCTTCCAAGACGCCAT
TAAGAATGCCGACTCCGCCCACGACTTGCACCTCGACATCCAGTTACGCAGCCGCCGCGCCCAAAATGCAGGGCCGGACT
TGGAGTTGATTTAA
ATGGTTGAAAACGAAAACCCTTTACCCGCAAAAGAAGAAATCTATTCACTGCTGAGAACCTTAAACAAATACAAAGGCTC
CGATCTCTTCATCACAGCCAATTTTCCGCCGGCCATGAAATTGGACGGCAAAATCACCCGCATCAACGAAACACCGCTCA
CGCCCGAGCGTTGTATGGAAATTGCGTTCTCCATCATGGGCCCCAAACAGATGGAAGAATTTACCAATACCAACGAATGC
AACTTCGCCATCAGCCTGCCCGACACCAGCCGTTTCCGTGTCAACGCCATGGTTCAGCGCGGTGCAACGGCTTTGGTATT
CCGTACCATTACCAGCAACATCCCCAAATTTGAAAACCTCAATCTGCCGCCGGTTTTAAAACAAATCGCCATGCAGAAAC
GCGGCTTGGTGATTTTTGTCGGCGGCACGGGCTCGGGTAAATCGACCTCGCTGGCCTCTATGATCGACTACCGCAACGAA
AACAGCTTCGACCACATCATCACCATCGAAGATCCGATCGAATTCGTACACAGCCACAAAAACTGCATCATTACCCAGCG
CGAAGTCGGCGTGGACACCGAAAACTGGTTTGCCGCGCTGAAAAACACGCTGCGCCAAGCCCCCGACGTGATTTTGATCG
GTGAGATCCGCGACCGCGAAACCATGGATTACGCCATTGCCTTCGCCGAAACCGGCCACTTGTGCATGGCCACGCTGCAC
GCCAACAGCACCAACCAAGCACTCGACCGCATCATCAACTTCTTCCCGGAAGAACGCCGCACCCAGCTGCTTACCGACCT
TTCGCTCAACCTGCAAGCCTTCATTTCACAGCGCTTGATTCCGCGCGAAGGCGGCAAAGGCCGTGTGGCCGCCGTGGAAG
TGCTACTGAATTCGCCTCTGATTGCCGAATTAATCCACAACGGCGACGTGCATTCCATTAAAGAAATCATGAAGAAATCG
CAAAGCTTGGGCATGCAAACGTTCGACCAAGCGTTATACGAACTGTATGAAAGCGGGCACATCAGCTTCCAAGACGCCAT
TAAGAATGCCGACTCCGCCCACGACTTGCACCTCGACATCCAGTTACGCAGCCGCCGCGCCCAAAATGCAGGGCCGGACT
TGGAGTTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
61.08 |
93.369 |
0.57 |
| pilU | Acinetobacter baylyi ADP1 |
57.925 |
92.042 |
0.533 |
| pilU | Vibrio cholerae strain A1552 |
52.925 |
95.225 |
0.504 |
| pilT | Legionella pneumophila strain Lp02 |
44.012 |
88.594 |
0.39 |
| pilT | Legionella pneumophila strain ERS1305867 |
44.012 |
88.594 |
0.39 |
| pilT | Acinetobacter baumannii strain A118 |
43.713 |
88.594 |
0.387 |
| pilT | Acinetobacter nosocomialis M2 |
43.713 |
88.594 |
0.387 |
| pilT | Acinetobacter baumannii D1279779 |
43.713 |
88.594 |
0.387 |
| pilT | Pseudomonas aeruginosa PAK |
43.195 |
89.655 |
0.387 |
| pilT | Acinetobacter baylyi ADP1 |
42.647 |
90.186 |
0.385 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.899 |
89.655 |
0.385 |
| pilT | Pseudomonas stutzeri DSM 10701 |
42.308 |
89.655 |
0.379 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.042 |
88.329 |
0.371 |
| pilT | Vibrio cholerae strain A1552 |
42.042 |
88.329 |
0.371 |
| pilT | Neisseria meningitidis 8013 |
40.29 |
91.512 |
0.369 |
| pilT | Neisseria gonorrhoeae MS11 |
39.826 |
91.247 |
0.363 |