Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG985_RS15545 Genome accession   NZ_CP108046
Coordinates   3422526..3423737 (-) Length   403 a.a.
NCBI ID   WP_371668927.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3417526..3428737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS15525 (OG985_15390) - 3417812..3418150 (-) 339 WP_003997576.1 P-II family nitrogen regulator -
  OG985_RS15530 (OG985_15395) - 3418147..3419487 (-) 1341 WP_371668924.1 ammonium transporter -
  OG985_RS15535 (OG985_15400) - 3419803..3421332 (-) 1530 WP_371668925.1 hypothetical protein -
  OG985_RS15540 (OG985_15405) - 3421766..3422422 (+) 657 WP_371668926.1 bifunctional DNA primase/polymerase -
  OG985_RS15545 (OG985_15410) pilA 3422526..3423737 (-) 1212 WP_371668927.1 signal recognition particle-docking protein FtsY Machinery gene
  OG985_RS15550 (OG985_15415) - 3424112..3425083 (+) 972 WP_371668928.1 LLM class flavin-dependent oxidoreductase -
  OG985_RS15555 (OG985_15420) - 3425171..3426589 (-) 1419 WP_371668929.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42731.01 Da        Isoelectric Point: 4.5475

>NTDB_id=651990 OG985_RS15545 WP_371668927.1 3422526..3423737(-) (pilA) [Streptomyces sp. NBC_00289]
METVILVVVIAVVLLGALGGLVVGSRRRKPLPPPPPTAPDITAPPAEPHVGDEAETPRDEPRRTIEEVDLPDGSAPTAVE
EPLSVPELEVPAIEVPEPTAGRLIRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVLPTQELVEGLR
ERVRVLGTRTPDELRALLRDELLKLIRTDVDRTVRTEPETSKPGIVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKEGKEMGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPL
DEVLLVLDATTGQNGLVQARVFAEVVSITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDAL
IGE

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=651990 OG985_RS15545 WP_371668927.1 3422526..3423737(-) (pilA) [Streptomyces sp. NBC_00289]
ATGGAAACCGTCATCCTTGTTGTAGTCATCGCCGTGGTCCTGCTCGGTGCGCTCGGGGGGCTTGTCGTCGGCAGCCGGCG
CCGGAAGCCGCTGCCCCCGCCGCCTCCCACCGCGCCCGACATCACCGCCCCTCCGGCCGAGCCGCACGTCGGCGACGAGG
CCGAGACGCCGCGCGACGAACCGCGCCGGACGATAGAGGAGGTGGATCTTCCGGACGGCTCGGCCCCGACGGCCGTCGAG
GAGCCGCTCTCCGTCCCCGAACTCGAAGTACCGGCGATCGAGGTGCCCGAGCCCACGGCCGGACGCCTGATCCGCCTGCG
GGCCCGGCTCTCCCGGTCCCAGAACGCCCTGGGCAAGGGACTGCTCACGCTCCTGTCACGCGAGCATCTCGACGAGGACA
CCTGGGAGGAGATCGAGGACACGCTGCTCACCGCCGACGTCGGCGTGCTGCCCACCCAGGAACTGGTCGAGGGCCTGCGC
GAGCGCGTGCGGGTGCTCGGCACCCGAACCCCGGACGAGCTGCGCGCGCTGCTCCGCGACGAGCTGCTCAAGCTGATCCG
CACCGATGTCGACCGCACGGTCCGGACCGAGCCCGAGACCAGCAAGCCCGGCATCGTGATGGTCGTCGGCGTCAACGGCA
CCGGCAAGACCACCACCACCGGCAAGCTCGCCCGGGTCCTGGTGGCCGACGGCCGCAGCGTCGTGCTCGGCGCCGCCGAC
ACCTTCCGGGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGGGTCGGCGCCCACACCGTGCGCGGCCCCGAGGG
CGGCGACCCCGCCTCCGTCGCCTTCGACGCGGTCAAGGAGGGCAAGGAGATGGGCGCCGACGTGGTGCTCATCGACACCG
CGGGCCGGCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTGGTCGAGAAGCACGCGCCGCTC
GACGAGGTGCTGCTCGTCCTGGACGCGACGACGGGCCAGAACGGTCTGGTGCAGGCGCGCGTCTTCGCCGAGGTGGTCTC
CATCACCGGCATCGTGCTCACCAAGCTGGACGGCACGGCGAAGGGCGGCATCGTGATCGCGGTCCAGCGCGAGCTGGGCG
TCCCGGTCAAGCTGATCGGTCTCGGCGAGGGCGCCGACGATCTGGCGCCGTTCGAACCGGAGGCGTTCGTTGACGCCCTT
ATCGGCGAGTAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(205-401)

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

44.277

82.382

0.365