Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG381_RS21245 Genome accession   NZ_CP107869
Coordinates   4727347..4728342 (-) Length   331 a.a.
NCBI ID   WP_327717648.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4722347..4733342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS21225 (OG381_21235) pfkB 4722388..4723335 (-) 948 WP_327717644.1 1-phosphofructokinase -
  OG381_RS21230 (OG381_21240) - 4723332..4724093 (-) 762 WP_046262157.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG381_RS21235 (OG381_21245) - 4724345..4725886 (-) 1542 WP_327717646.1 MFS transporter -
  OG381_RS21240 (OG381_21250) - 4725949..4726914 (+) 966 WP_307029482.1 YafY family protein -
  OG381_RS21245 (OG381_21255) rpoS 4727347..4728342 (-) 996 WP_327717648.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG381_RS21250 (OG381_21260) - 4728528..4729043 (+) 516 WP_327717650.1 N-acetyltransferase family protein -
  OG381_RS21255 (OG381_21265) - 4729051..4729836 (-) 786 WP_327717651.1 class III extradiol ring-cleavage dioxygenase -
  OG381_RS21260 (OG381_21270) - 4729945..4730460 (+) 516 WP_327717652.1 MarR family transcriptional regulator -
  OG381_RS21265 (OG381_21275) - 4730576..4732117 (-) 1542 WP_327717653.1 MFS transporter -
  OG381_RS21270 (OG381_21280) - 4732238..4732879 (-) 642 WP_327717654.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37029.69 Da        Isoelectric Point: 4.8957

>NTDB_id=647546 OG381_RS21245 WP_327717648.1 4727347..4728342(-) (rpoS) [Streptomyces sp. NBC_00490]
MATRAVARRKSANGGTDAASSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQLLDGFEESKADA
TREELEALVDESERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAIT
RSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNADRVVDVLDWARDPVSLNMAVDDDGDTQFG
DLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKK
LARDTGFDAAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=647546 OG381_RS21245 WP_327717648.1 4727347..4728342(-) (rpoS) [Streptomyces sp. NBC_00490]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCAATGGCGGGACCGACGCGGCAAGCAGTGTTCGCGCCCATGGCGG
CGAGATCGCCGATCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCCCAGCAGCTCCTCGACGGATTCGAGGAGTCCAAGGCGGACGCC
ACCCGTGAGGAGCTCGAGGCGCTGGTCGACGAGTCCGAGCGGGCCAAGGACGTCTTCATCCGCTCGAACCTCCGTCTGGT
CGTCGCTGTCGCGCGCCGCTACCCCCGTGCCGGTCTGCCCCTGCTCGACCTGATCCAGGAGGGCAATGCCGGTCTGGTGC
GCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCCATCACC
CGCTCGATAGCGGACCAGTCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTGGGCCGGATCCGCCGCGTGCA
GCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCGGCGGAGATCGCCGCCGAGCTCGGCTCCAACGCCGACCGCG
TGGTCGACGTGCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGCGACACCCAGTTCGGC
GACCTGCTCGAGGACACCTCCGCGGTCTCCCCGGAGCAGTCGGTGCTGACGCTGCTGCGCAGCGAGGAGCTGGACGACCT
GATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGAGGACGGCCGGGAGCGCACGCTGA
CCGAGGTCGGCAAGGAGCACGGGCTGACGCGCGAGCGCATCCGGCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAGAAG
CTCGCCCGGGACACCGGGTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(178-254)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70, region 4 (Sigma70_r4)

(268-320)

Sigma-70 region 2 (Sigma70_r2)

(99-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.332

0.363