Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG381_RS17010 Genome accession   NZ_CP107869
Coordinates   3751743..3753476 (+) Length   577 a.a.
NCBI ID   WP_327716944.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746743..3758476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS16975 (OG381_16985) - 3747550..3748611 (+) 1062 WP_327716941.1 alkene reductase -
  OG381_RS16980 (OG381_16990) - 3748619..3749095 (+) 477 WP_327716942.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG381_RS17000 (OG381_17010) - 3749719..3750024 (+) 306 WP_307030964.1 YtxH domain-containing protein -
  OG381_RS17005 (OG381_17015) - 3750142..3751581 (+) 1440 WP_327716943.1 FGGY family carbohydrate kinase -
  OG381_RS17010 (OG381_17020) rcrP 3751743..3753476 (+) 1734 WP_327716944.1 ABC transporter ATP-binding protein Regulator
  OG381_RS17015 (OG381_17025) rcrQ 3753476..3755404 (+) 1929 WP_327716945.1 ABC transporter ATP-binding protein Regulator
  OG381_RS17020 (OG381_17030) - 3755554..3756849 (-) 1296 WP_327716946.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62844.02 Da        Isoelectric Point: 5.5752

>NTDB_id=647535 OG381_RS17010 WP_327716944.1 3751743..3753476(+) (rcrP) [Streptomyces sp. NBC_00490]
MLIRLLRTYLRPYRKPIALLVVLQFLQTCATLYLPTLNADIIDSGVVKGDTGYILSFGALMIGISLIQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCAGGIVLALGLDVPLSAV
LVAVVPVLGVCVTLIVRRLRPLFRAMQVRLDTVNQVLREQITGNRVIRAFVRDDYEKDRFRRANAELTEMSLGTGKYLAL
MFPMVMTVVNVSSIAVVWFGAHRIDDGQMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PKAPVLELRRHGHLEIRGAGFRYPGAEEPVLKGVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGESVA
GIEPELLARTVGMVPQRPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKDFVERLENGLDSPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=647535 OG381_RS17010 WP_327716944.1 3751743..3753476(+) (rcrP) [Streptomyces sp. NBC_00490]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACCGGAAACCCATCGCCCTCCTGGTGGTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCACGCTGAACGCGGACATCATCGACAGCGGCGTCGTGAAGGGCGACACCGGGTACA
TCCTGTCCTTCGGCGCACTGATGATCGGTATCTCGCTGATCCAGGTCGTGTGCAACATCGGTGCCGTCTACTACGGCGCG
CGGACGGCCGCGGCGCTGGGCCGGGACGTGCGGGCCGCCGTGTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTGGG
CCAGTTCGGGGCGCCCTCGCTGATCACCCGGACGACGAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGTGCGGGCGGGATCGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGCGGTC
CTCGTCGCGGTCGTCCCCGTGCTGGGTGTCTGCGTGACCTTGATCGTGCGGCGGCTGCGCCCGCTGTTCCGGGCCATGCA
GGTGCGCCTCGACACCGTGAACCAGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTGCGCGACG
ACTACGAGAAGGACCGCTTCCGGCGCGCGAACGCCGAGCTCACCGAGATGTCGCTGGGCACCGGCAAGTACCTCGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACGTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACGACGG
GCAGATGCAGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGGATCCAGGAGGTGCTGGACACCTCCTCGAGCGTGGTTCCG
CCCAAGGCTCCGGTGCTGGAGCTGCGCCGCCACGGCCATCTGGAGATCCGCGGGGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAAGGGCGTCGACCTCGTCGCCCGGCCCGGCGAGGTGACCGCCGTCATCGGGTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGGTGCCCCGGCTGTTCGACGCCACCGACGGCGAGGTGCTGGTCGACGGGGAGAGCGTGGCG
GGCATCGAGCCCGAGCTGCTGGCGCGGACCGTCGGCATGGTGCCGCAGCGGCCGTACCTCTTCGCGGGGACCGTGGCGAG
CAATCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGGAGCGGCTGGAGAACGGGCTCGACTCCCCCGTCGCCCAGGGCGGCACCAATGTCTCGGGAGGTCAGCGGCAGCGGCTC
GCCATCGCCCGTACGCTCGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCGGCCCTGTCCCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTACTCGACGAGGGACGGGTCGTCGGCACCGGCCGGCATCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.637

97.4

0.406