Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   L0B17_RS07190 Genome accession   NZ_CP090974
Coordinates   1620473..1621510 (+) Length   345 a.a.
NCBI ID   WP_226414088.1    Uniprot ID   -
Organism   Shewanella sp. OMA3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1615473..1626510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B17_RS07165 (L0B17_07165) rdgB 1616630..1617247 (-) 618 WP_235088756.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  L0B17_RS07170 (L0B17_07170) - 1617462..1617869 (-) 408 WP_235089669.1 DUF4426 domain-containing protein -
  L0B17_RS07175 (L0B17_07175) - 1618106..1618654 (-) 549 WP_235088758.1 YggT family protein -
  L0B17_RS07180 (L0B17_07180) proC 1618784..1619602 (-) 819 WP_235088765.1 pyrroline-5-carboxylate reductase -
  L0B17_RS07185 (L0B17_07185) - 1619756..1620448 (-) 693 WP_235088770.1 YggS family pyridoxal phosphate-dependent enzyme -
  L0B17_RS07190 (L0B17_07190) pilT 1620473..1621510 (+) 1038 WP_226414088.1 type IV pilus twitching motility protein PilT Machinery gene
  L0B17_RS07195 (L0B17_07195) - 1621522..1622633 (+) 1112 Protein_1393 PilT/PilU family type 4a pilus ATPase -
  L0B17_RS07200 (L0B17_07200) - 1622816..1623370 (+) 555 WP_235088774.1 hypothetical protein -
  L0B17_RS07205 (L0B17_07205) - 1623406..1623930 (+) 525 WP_235088776.1 hypothetical protein -
  L0B17_RS07210 (L0B17_07210) - 1624250..1624780 (+) 531 WP_235089673.1 glutathione peroxidase -
  L0B17_RS07215 (L0B17_07215) hemH 1624905..1625918 (+) 1014 WP_235088785.1 ferrochelatase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38254.87 Da        Isoelectric Point: 7.0497

>NTDB_id=646815 L0B17_RS07190 WP_226414088.1 1620473..1621510(+) (pilT) [Shewanella sp. OMA3-2]
MEITELLAFSVKHKASDLHLSAGVSPMIRVDGEVRKINLPPLDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAGAVFRTIPSDILSLEQLGAPDIFKKISSYPRGLVLVTGPTGSGKSTTLAAMVDYINENRHEHILTIED
PIEFVHQNKQCLVNQREVHKHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAGEKGMVRTMLSESLQAVISQTLVKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLDQCL
QTLVNRGLITREDAMQKSGNKQANF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=646815 L0B17_RS07190 WP_226414088.1 1620473..1621510(+) (pilT) [Shewanella sp. OMA3-2]
ATGGAAATCACTGAATTACTGGCCTTTAGTGTAAAACATAAAGCATCAGATCTACATCTTTCTGCAGGTGTTTCACCTAT
GATCCGTGTTGACGGTGAAGTCAGAAAAATTAACTTGCCACCGTTAGATCATCAAGGCGTACACAGCTTAGTGTATGACA
TTATGAACGACAAGCAGCGTAAAGATTACGAAGAACATCTTGAAATAGATTTCTCGTTTGAAGTACCCAACTTAGCACGT
TTTCGTGTTAACGCATTTAACCAATCCCGTGGTGCAGGTGCTGTTTTTCGTACTATTCCTTCAGATATTTTGTCACTTGA
ACAACTCGGTGCGCCAGATATTTTCAAAAAGATCTCCAGTTATCCCCGTGGGTTAGTGTTAGTAACTGGACCAACAGGTT
CGGGTAAATCAACTACGTTAGCGGCAATGGTCGATTATATTAATGAAAATCGCCATGAGCACATTTTAACGATTGAAGAC
CCAATAGAATTCGTGCATCAAAACAAGCAATGTTTGGTCAACCAACGCGAAGTGCACAAACATACCCATAGTTTTAATGC
CGCGCTTAGAAGTGCATTGCGTGAAGATCCCGATGTTATTTTAGTGGGTGAGATGCGTGACTTAGAAACTATCCGCTTAG
CTATGACAGCAGCTGAAACTGGTCACTTAGTGTTTGGTACCTTACATACCACTTCAGCGGCAAAAACCATTGACCGTATT
GTTGACGTATTTCCTGCCGGTGAAAAAGGCATGGTACGTACTATGTTGTCTGAATCATTACAGGCGGTTATTTCACAAAC
GCTGGTTAAAAAGGTTGGCGGAGGACGTGTTGCTGCACACGAAATTATGATGGGGACACCGGCTATTCGTAACTTAATCC
GTGAAGATAAAGTGGCGCAAATGTACTCAGCTATTCAAACCGGTATGGCTCATGGTATGCAAACATTAGATCAGTGCTTA
CAAACCTTAGTCAATCGTGGTTTGATTACACGTGAAGATGCCATGCAGAAAAGCGGTAATAAACAAGCCAACTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

81.138

96.812

0.786
  pilT Acinetobacter baumannii D1279779

81.138

96.812

0.786
  pilT Acinetobacter baumannii strain A118

81.138

96.812

0.786
  pilT Pseudomonas aeruginosa PAK

78.994

97.971

0.774
  pilT Pseudomonas stutzeri DSM 10701

77.101

100

0.771
  pilT Acinetobacter baylyi ADP1

80.243

95.362

0.765
  pilT Legionella pneumophila strain Lp02

76.246

98.841

0.754
  pilT Legionella pneumophila strain ERS1305867

76.246

98.841

0.754
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.81

97.681

0.701
  pilT Vibrio cholerae strain A1552

71.81

97.681

0.701
  pilT Neisseria meningitidis 8013

69.477

99.71

0.693
  pilT Neisseria gonorrhoeae MS11

69.186

99.71

0.69
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.442

98.261

0.496
  pilU Pseudomonas stutzeri DSM 10701

43.452

97.391

0.423
  pilU Vibrio cholerae strain A1552

41.298

98.261

0.406
  pilU Acinetobacter baylyi ADP1

39.941

97.971

0.391