Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   L1E13_RS09125 Genome accession   NZ_CP090909
Coordinates   1920146..1921126 (-) Length   326 a.a.
NCBI ID   WP_126296856.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain M1     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1915146..1926126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1E13_RS09095 (L1E13_09095) - 1916027..1916524 (+) 498 WP_234979360.1 SprT family zinc-dependent metalloprotease -
  L1E13_RS09100 (L1E13_09100) endA 1916619..1917326 (+) 708 WP_003860034.1 deoxyribonuclease I -
  L1E13_RS09105 (L1E13_09105) rsmE 1917378..1918109 (+) 732 WP_017382923.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  L1E13_RS09110 (L1E13_09110) gshB 1918137..1919084 (+) 948 WP_003860032.1 glutathione synthase -
  L1E13_RS09115 (L1E13_09115) - 1919159..1919719 (+) 561 WP_022649353.1 YqgE/AlgH family protein -
  L1E13_RS09120 (L1E13_09120) ruvX 1919719..1920135 (+) 417 WP_003860030.1 Holliday junction resolvase RuvX -
  L1E13_RS09125 (L1E13_09125) pilT 1920146..1921126 (-) 981 WP_126296856.1 type IV pilus twitching motility protein PilT Machinery gene
  L1E13_RS09130 (L1E13_09130) - 1921144..1921845 (+) 702 WP_003860026.1 YggS family pyridoxal phosphate-dependent enzyme -
  L1E13_RS09135 (L1E13_09135) - 1921867..1922433 (+) 567 WP_003860024.1 YggT family protein -
  L1E13_RS09140 (L1E13_09140) yggU 1922430..1922726 (+) 297 WP_003860023.1 DUF167 family protein YggU -
  L1E13_RS09145 (L1E13_09145) - 1922730..1923323 (+) 594 WP_022651831.1 XTP/dITP diphosphatase -
  L1E13_RS09150 (L1E13_09150) hemW 1923316..1924464 (+) 1149 WP_045332868.1 radical SAM family heme chaperone HemW -
  L1E13_RS09155 (L1E13_09155) - 1924521..1924883 (+) 363 WP_022651832.1 DUF559 domain-containing protein -
  L1E13_RS09160 (L1E13_09160) - 1924996..1925712 (-) 717 WP_003862419.1 DUF2884 domain-containing protein -
  L1E13_RS09165 (L1E13_09165) - 1925770..1926096 (-) 327 WP_003862421.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35783.78 Da        Isoelectric Point: 6.2344

>NTDB_id=646382 L1E13_RS09125 WP_126296856.1 1920146..1921126(-) (pilT) [Enterobacter hormaechei strain M1]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPDVEALLKSWLNDEQQGAWWANGQVDFAVTLADRQRLRG
SAFKHMHGVSIALRLMPLTCPQLSALGVPRAIPELLSNDNGLILVTGATGSGKSTTLAAMVDFLNHQTDGHILTLEDPVE
FMYQSERCLIQQREIGLHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLRQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=646382 L1E13_RS09125 WP_126296856.1 1920146..1921126(-) (pilT) [Enterobacter hormaechei strain M1]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCACCGCG
CTGGCGCAGGTCAGGCCGTCTTGAACCTGCGCCGTTTCCGCCCCCGGATGTGGAGGCGTTATTAAAATCGTGGCTCAACG
ATGAACAGCAGGGCGCATGGTGGGCAAATGGGCAGGTGGATTTTGCCGTTACCCTCGCAGACCGTCAGCGCCTGCGCGGC
AGTGCGTTTAAGCATATGCACGGCGTTTCGATCGCGCTGCGCCTGATGCCGCTGACGTGCCCGCAGCTCTCTGCGTTAGG
TGTGCCGCGAGCGATCCCGGAGCTTTTGTCCAATGACAATGGCCTGATTCTGGTCACCGGCGCCACCGGCAGTGGGAAAT
CGACCACCCTGGCCGCGATGGTCGATTTCCTCAATCACCAGACGGACGGGCATATTCTGACCCTGGAAGATCCGGTGGAG
TTTATGTACCAGAGTGAACGTTGCCTGATCCAGCAGCGGGAGATAGGCCTGCACAGCCCGTCCTTTGCCGAGGCCCTGCG
CAGCGCGCTGCGTGAAGATCCGGATGTGATTCTGCTTGGTGAGCTGCGCGACAGCGAGACGATACGCCTGGCGCTGACGG
CGGCGGAAACCGGCCATCTGGTGTTGGCCACGCTGCACACGCGCGGTGCGGCGCAGGCGATCGAGCGCCTGGTCGATACC
TTCCCGGCGCAGGAGAAAGATCCGGTGCGTAATCAGCTGGCGGGAAGCCTGCGTGCGGTTCTGGCGCAGAAGCTGCGTCA
GGATGTCCAGGGCGGGCGCGTGGCGCTGTATGAGCTACTGGTGAATACCTCGGCGGCGGCAAACCTGATCCGCGAAGGCA
AAACCTGGCAACTGCCGGGCATTATTCAAACGGGGCAGCAGGCGGGGATGCAGAACTTTGAGCAGAGTCTGGCGGAGCGA
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(73-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.459

100

0.506
  pilT Vibrio cholerae strain A1552

50.459

100

0.506
  pilT Legionella pneumophila strain Lp02

48.758

98.773

0.482
  pilT Legionella pneumophila strain ERS1305867

48.758

98.773

0.482
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Pseudomonas stutzeri DSM 10701

47.706

100

0.479
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Acinetobacter baumannii strain A118

47.095

100

0.472
  pilT Acinetobacter baumannii D1279779

47.095

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Pseudomonas aeruginosa PAK

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.963

99.08

0.436
  pilU Pseudomonas stutzeri DSM 10701

37.879

100

0.383
  pilU Vibrio cholerae strain A1552

38.199

98.773

0.377
  pilB Haemophilus influenzae 86-028NP

33.427

100

0.365