Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SPB_RS07700 Genome accession   NZ_AEUT02000001
Coordinates   1532087..1532566 (-) Length   159 a.a.
NCBI ID   WP_003106108.1    Uniprot ID   A0AAE4KZD7
Organism   Streptococcus parauberis NCFD 2020     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527087..1537566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS07665 (SPB_1580) rsfS 1527863..1528216 (-) 354 WP_003105715.1 ribosome silencing factor -
  SPB_RS07670 (SPB_1581) - 1528234..1528740 (-) 507 WP_003102420.1 cysteine hydrolase family protein -
  SPB_RS07675 (SPB_1582) yqeK 1528743..1529333 (-) 591 WP_003102923.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SPB_RS07680 (SPB_1583) - 1529330..1529962 (-) 633 WP_003104077.1 nicotinate-nucleotide adenylyltransferase -
  SPB_RS07685 (SPB_1584) yhbY 1529989..1530300 (-) 312 WP_003105311.1 ribosome assembly RNA-binding protein YhbY -
  SPB_RS07690 (SPB_1585) yqeH 1530328..1531446 (-) 1119 WP_003103642.1 ribosome biogenesis GTPase YqeH -
  SPB_RS07695 (SPB_1586) - 1531446..1531973 (-) 528 WP_003103362.1 YqeG family HAD IIIA-type phosphatase -
  SPB_RS07700 (SPB_1587) comX/sigX/comX2/sigX2 1532087..1532566 (-) 480 WP_003106108.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19403.47 Da        Isoelectric Point: 9.1839

>NTDB_id=64556 SPB_RS07700 WP_003106108.1 1532087..1532566(-) (comX/sigX/comX2/sigX2) [Streptococcus parauberis NCFD 2020]
MDQFDKCFKTVKPTIYKFMRSYYIHLWEKDDWFQEGRLILHDLLHRNPDLYKNEQQLLVYFKTKFSSHLKDVIRFQESQK
RRFNRMPYEEIGEIAHKIPSQGLVLDEFIAYQSIIEQISGILTKEEQSQLYALMRGERFIGRRALLRKIKPFFIDFLDE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=64556 SPB_RS07700 WP_003106108.1 1532087..1532566(-) (comX/sigX/comX2/sigX2) [Streptococcus parauberis NCFD 2020]
ATGGATCAATTTGATAAATGTTTTAAAACTGTCAAACCAACTATTTATAAATTTATGCGGTCTTATTATATTCACTTATG
GGAAAAGGATGATTGGTTTCAAGAAGGTCGACTCATTTTGCATGATTTACTTCATCGAAATCCAGACTTGTATAAGAATG
AGCAACAACTATTAGTATATTTTAAAACTAAATTTTCTTCACACTTAAAGGATGTTATCCGTTTCCAAGAGAGTCAGAAG
AGACGATTTAATAGAATGCCATATGAAGAAATTGGAGAAATAGCTCATAAAATTCCAAGTCAAGGATTGGTATTGGATGA
GTTTATTGCATACCAATCAATTATTGAACAGATTTCTGGTATTTTAACAAAAGAAGAGCAGTCTCAATTATATGCATTGA
TGAGAGGCGAAAGGTTTATTGGTAGAAGAGCACTATTAAGAAAAATTAAACCATTTTTTATCGATTTCTTGGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

58

94.34

0.547
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

58

94.34

0.547
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

58

94.34

0.547
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

58

94.34

0.547
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

58

94.34

0.547
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

58

94.34

0.547
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

46.753

96.855

0.453
  comX Streptococcus sobrinus strain NIDR 6715-7

46.104

96.855

0.447
  comX/sigX Streptococcus mutans UA159

45.161

97.484

0.44
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

42.208

96.855

0.409
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

42.208

96.855

0.409
  comX/comX1 Streptococcus pneumoniae Rx1

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae TIGR4

42.953

93.711

0.403
  comX/comX1 Streptococcus pneumoniae TIGR4

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae Rx1

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae D39

42.953

93.711

0.403
  comX/comX1 Streptococcus pneumoniae D39

42.953

93.711

0.403
  comX/comX2 Streptococcus pneumoniae R6

42.953

93.711

0.403
  comX/comX1 Streptococcus pneumoniae R6

42.953

93.711

0.403
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

41.176

96.226

0.396
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

41.176

96.226

0.396
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

41.176

96.226

0.396
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.869

96.226

0.384
  comX/sigX Streptococcus suis D9

39.61

96.855

0.384
  comX/sigX Streptococcus suis isolate S10

39.61

96.855

0.384
  comX/sigX Streptococcus suis P1/7

39.61

96.855

0.384
  comX Streptococcus thermophilus LMG 18311

38.562

96.226

0.371
  comX Streptococcus thermophilus LMD-9

38.562

96.226

0.371

Multiple sequence alignment