Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LPY96_RS07855 Genome accession   NZ_CP090568
Coordinates   1700936..1701973 (+) Length   345 a.a.
NCBI ID   WP_269340263.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1695936..1706973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY96_RS23685 - 1696209..1696751 (-) 543 WP_005913301.1 hypothetical protein -
  LPY96_RS07830 (LPY96_07840) - 1696808..1697149 (-) 342 WP_003489901.1 DUF3861 family protein -
  LPY96_RS07835 (LPY96_07845) - 1697207..1697848 (-) 642 WP_033479080.1 M23 family metallopeptidase -
  LPY96_RS07840 (LPY96_07850) - 1697955..1698380 (-) 426 WP_003489904.1 HU family DNA-binding protein -
  LPY96_RS07845 (LPY96_07855) proC 1698934..1699788 (-) 855 WP_269340260.1 pyrroline-5-carboxylate reductase -
  LPY96_RS07850 (LPY96_07860) - 1699832..1700524 (-) 693 WP_269340261.1 YggS family pyridoxal phosphate-dependent enzyme -
  LPY96_RS07855 (LPY96_07865) pilT 1700936..1701973 (+) 1038 WP_269340263.1 type IV pilus twitching motility protein PilT Machinery gene
  LPY96_RS07860 (LPY96_07870) pilU 1702096..1703226 (+) 1131 WP_003489921.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LPY96_RS07865 (LPY96_07875) - 1703720..1704394 (+) 675 WP_033479081.1 YitT family protein -
  LPY96_RS07870 (LPY96_07880) - 1704569..1705495 (-) 927 WP_269340266.1 DUF72 domain-containing protein -
  LPY96_RS07875 (LPY96_07885) - 1705503..1706075 (-) 573 WP_005919206.1 DNA-3-methyladenine glycosylase I -
  LPY96_RS07880 (LPY96_07890) - 1706364..1706930 (+) 567 WP_269340269.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38687.31 Da        Isoelectric Point: 6.5055

>NTDB_id=643520 LPY96_RS07855 WP_269340263.1 1700936..1701973(+) (pilT) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPDGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=643520 LPY96_RS07855 WP_269340263.1 1700936..1701973(+) (pilT) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGCCGCATCAATATTCCGGCGTTGGACCACAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGGCGCGATTACGAGGAATTCCTCGAAGTCGACTTTTCGTTCGAAATTCCGTCGCTGGCGCGT
TTTCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCGTCCGAAGTGCTGACGCTGGA
AGACCTTGGCTGCCCGCCGATCTTCCGTCAGCTGATCGATCAGCCGCAGGGCCTGATCCTGGTGACCGGCCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAATGAGTACGGGCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTCCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACGCACGGCTTCAACGA
AGCGCTGCGCTCGGCACTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAATTGCGCGACCTGGAAACCATTCGCCTGG
CGCTCACCGCTGCGGAAACCGGTCACTTGGTGTTCGGCACCCTGCACACCAGCTCGGCCGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGACGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGTTGCGCGCTGTGATTTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGCCGTACCGCAGCATGGGAAATCATGGTCGGCACCCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCGATCCAGACCGGCCAGCAATACGGCATGCAGACGCTGGACCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCCCGCGAGTACGCCAAGGACAAGCGGATATTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.651

99.71

0.794
  pilT Acinetobacter baumannii D1279779

79.651

99.71

0.794
  pilT Acinetobacter baumannii strain A118

79.651

99.71

0.794
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

78.761

98.261

0.774
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.689

98.841

0.649
  pilT Neisseria gonorrhoeae MS11

65.396

98.841

0.646
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.413

98.261

0.397
  pilU Acinetobacter baylyi ADP1

40

98.551

0.394
  pilU Vibrio cholerae strain A1552

41.231

94.203

0.388