Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LPY96_RS04600 Genome accession   NZ_CP090568
Coordinates   884397..885530 (-) Length   377 a.a.
NCBI ID   WP_005914752.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 879397..890530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY96_RS04580 (LPY96_04580) - 880591..881964 (-) 1374 WP_269339900.1 DEAD/DEAH box helicase -
  LPY96_RS04585 (LPY96_04585) - 882347..883336 (+) 990 WP_033837132.1 fumarylacetoacetate hydrolase family protein -
  LPY96_RS04590 (LPY96_04590) maiA 883368..884030 (+) 663 WP_005920825.1 maleylacetoacetate isomerase -
  LPY96_RS04595 - 884152..884283 (+) 132 WP_257608096.1 hypothetical protein -
  LPY96_RS04600 (LPY96_04595) pilU 884397..885530 (-) 1134 WP_005914752.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LPY96_RS04605 (LPY96_04600) - 885629..886012 (+) 384 WP_331283162.1 DUF4398 domain-containing protein -
  LPY96_RS04610 (LPY96_04605) - 886009..886899 (+) 891 WP_005914755.1 hypothetical protein -
  LPY96_RS04615 (LPY96_04610) - 887251..887469 (+) 219 WP_003484103.1 YdcH family protein -
  LPY96_RS04620 (LPY96_04615) - 887708..889078 (+) 1371 WP_005914756.1 pyridoxal-phosphate dependent enzyme -
  LPY96_RS04625 (LPY96_04620) - 889178..890365 (+) 1188 WP_005920817.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41821.15 Da        Isoelectric Point: 5.9782

>NTDB_id=643511 LPY96_RS04600 WP_005914752.1 884397..885530(-) (pilU) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKGVDDRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYEAAAAPKISHGFI

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=643511 LPY96_RS04600 WP_005914752.1 884397..885530(-) (pilU) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAATGCCTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTTTACCCGCTCGGCAATACGGGGTTGCCGCCGGGGATGGTCAAGAAAATCGCTTACTCGT
TGATGGACGAAGGCCAGGTACCGCAGTTCGAGCGCGAGCTCGAGCTCAACATGGCCATCGCCCTGCCGGACGCCGGCCGC
TTCCGCGTGAACGTGTTCAAGCAGCGCGGCGAGGTGGGCATGGTGATTCGCGCCATTCGCAGCCGGATTCCCAGCATCGA
AGAGCTCAACCTGCCGCAGGTGCTCAAGGACGTCATCATGACCCCGCGCGGGCTGGTGCTGGTGGTGGGTTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCGTCGATGATCGACCACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATATCTGCACAAACACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGACACCCACGCCTTCCAGAG
CGCGCTGAAGAACGCCATGCGCGAGGCGCCGGACGTGATTCTGATCGGCGAGATCCTGGACGCCGAAACCATGGAGGCGG
CGATCGCTTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAATGCCGACCAGACCATCGAGCGCATC
CTCAATTTCTTCCCGGAAAGCGCGCACAAGAACGTGTTGATGAACCTGGCGCTGAACCTGCGCGCGGTCATTTCCCAGCG
TTTGGTCAAGGGCGTGGACGACCGTCGTCGACCGGCCACCGAAGTGCTGCTCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAAGTGCACGAGGTCAAGCAGGCGATGGAAGAGTCGCTGGAAGAAGGCATGCAGACCTTCGACCAATGCCTG
TTCCGGATGGTGAAGTCGGGCGAAATCGAGCAGGAAGAAGCGCTGCGCGCTGCCGACTCGCGCGACGGCCTGGCCCTGAA
GTTCCGTCTTTCCGAAGGCGGCTCCGGCGAGCACGACCCGTACGCGGACTACGAAGCGGCCGCGGCACCGAAGATCAGCC
ACGGGTTCATCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(81-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

51.811

95.225

0.493
  pilU Vibrio cholerae strain A1552

49.167

95.491

0.469
  pilU Acinetobacter baylyi ADP1

49.435

93.899

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.979

100

0.446
  pilT Pseudomonas aeruginosa PAK

42.899

89.655

0.385
  pilT Acinetobacter baumannii D1279779

41.42

89.655

0.371
  pilT Acinetobacter nosocomialis M2

41.42

89.655

0.371
  pilT Acinetobacter baumannii strain A118

41.42

89.655

0.371
  pilT Pseudomonas stutzeri DSM 10701

41.617

88.594

0.369
  pilT Acinetobacter baylyi ADP1

40.882

90.186

0.369
  pilT Legionella pneumophila strain Lp02

40.828

89.655

0.366
  pilT Legionella pneumophila strain ERS1305867

40.828

89.655

0.366
  pilT Vibrio cholerae strain A1552

41.141

88.329

0.363
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.141

88.329

0.363
  pilT Neisseria gonorrhoeae MS11

39.193

92.042

0.361
  pilT Neisseria meningitidis 8013

39.193

92.042

0.361