Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LZ752_RS06185 | Genome accession | NZ_CP090518 |
| Coordinates | 1361052..1362086 (+) | Length | 344 a.a. |
| NCBI ID | WP_061278115.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Stag's Leap | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1356052..1367086
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ752_RS06165 (LZ752_06165) | - | 1356763..1357542 (+) | 780 | WP_004087296.1 | beta-ketoacyl synthase chain length factor | - |
| LZ752_RS06170 (LZ752_06170) | - | 1357539..1358363 (+) | 825 | WP_011097969.1 | glycosyltransferase family 2 protein | - |
| LZ752_RS06175 (LZ752_06175) | - | 1358997..1359824 (-) | 828 | WP_012382641.1 | glycosyltransferase family 2 protein | - |
| LZ752_RS06180 (LZ752_06180) | - | 1360182..1360394 (-) | 213 | WP_004087301.1 | hypothetical protein | - |
| LZ752_RS06185 (LZ752_06185) | pilT | 1361052..1362086 (+) | 1035 | WP_061278115.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LZ752_RS06190 (LZ752_06190) | pilU | 1362252..1363382 (+) | 1131 | WP_011097971.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LZ752_RS06195 (LZ752_06195) | - | 1364075..1365043 (-) | 969 | WP_004087304.1 | YafY family protein | - |
| LZ752_RS06200 (LZ752_06200) | - | 1365892..1366701 (+) | 810 | WP_004087308.1 | DUF481 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38496.26 Da Isoelectric Point: 7.2870
>NTDB_id=643127 LZ752_RS06185 WP_061278115.1 1361052..1362086(+) (pilT) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYKEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYKEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
Nucleotide
Download Length: 1035 bp
>NTDB_id=643127 LZ752_RS06185 WP_061278115.1 1361052..1362086(+) (pilT) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCCGCATTCGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTATAAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTAGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCTAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCTATGCTTTCCGAATCGCTCTGCGGGATCATCTCGCAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAGACCCTTGACCAGCATTTA
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCCGCATTCGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTATAAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTAGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCTAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCTATGCTTTCCGAATCGCTCTGCGGGATCATCTCGCAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAGACCCTTGACCAGCATTTA
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
75.581 |
100 |
0.756 |
| pilT | Pseudomonas aeruginosa PAK |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter nosocomialis M2 |
74.128 |
100 |
0.741 |
| pilT | Acinetobacter baumannii D1279779 |
74.128 |
100 |
0.741 |
| pilT | Acinetobacter baumannii strain A118 |
74.128 |
100 |
0.741 |
| pilT | Acinetobacter baylyi ADP1 |
74.128 |
100 |
0.741 |
| pilT | Legionella pneumophila strain Lp02 |
70.93 |
100 |
0.709 |
| pilT | Legionella pneumophila strain ERS1305867 |
70.93 |
100 |
0.709 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.761 |
97.384 |
0.66 |
| pilT | Vibrio cholerae strain A1552 |
67.761 |
97.384 |
0.66 |
| pilT | Neisseria gonorrhoeae MS11 |
62.463 |
99.128 |
0.619 |
| pilT | Neisseria meningitidis 8013 |
62.17 |
99.128 |
0.616 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.696 |
100 |
0.488 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.698 |
100 |
0.407 |
| pilU | Vibrio cholerae strain A1552 |
40.116 |
100 |
0.401 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |