Detailed information NTG0641941

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM37_RS18235
• Genome accession: NZ_CP107172
• Coordinates: 3685458..3686450 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3680458..3691450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM37_RS18215 (OGM37_18195)	ygbM	3681096..3681872 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM37_RS18220 (OGM37_18200)	ygbN	3681961..3683325 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM37_RS18225 (OGM37_18205)	-	3683468..3684511 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM37_RS18230 (OGM37_18210)	-	3684736..3685287 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM37_RS18235 (OGM37_18215)	rpoS	3685458..3686450 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM37_RS18240 (OGM37_18220)	nlpD	3686513..3687607 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM37_RS18245 (OGM37_18225)	pcm	3687792..3688418 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM37_RS18250 (OGM37_18230)	surE	3688412..3689173 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM37_RS18255 (OGM37_18235)	truD	3689154..3690203 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM37_RS18260 (OGM37_18240)	ispF	3690200..3690679 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM37_RS18265 (OGM37_18245)	ispD	3690679..3691389 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641941 OGM37_RS18235 WP_000081550.1 3685458..3686450(-) (rpoS) [Escherichia coli strain R8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641941 OGM37_RS18235 WP_000081550.1 3685458..3686450(-) (rpoS) [Escherichia coli strain R8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715