Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ODQ18_RS06590 Genome accession   NZ_CP107039
Coordinates   1269932..1270363 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain 11060     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264932..1275363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS06580 (ODQ18_06580) hexA 1266416..1268992 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  ODQ18_RS06585 (ODQ18_06585) cotE 1269125..1269670 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  ODQ18_RS06590 (ODQ18_06590) ymcA 1269932..1270363 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ODQ18_RS06595 (ODQ18_06595) miaB 1270365..1271894 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ODQ18_RS06600 (ODQ18_06600) kbl 1272042..1273220 (-) 1179 WP_015715903.1 glycine C-acetyltransferase -
  ODQ18_RS06605 (ODQ18_06605) tdh 1273233..1274276 (-) 1044 WP_015715902.1 L-threonine 3-dehydrogenase -
  ODQ18_RS06610 (ODQ18_06610) spoVS 1274541..1274801 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=640240 ODQ18_RS06590 WP_003231834.1 1269932..1270363(-) (ymcA) [Bacillus subtilis strain 11060]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=640240 ODQ18_RS06590 WP_003231834.1 1269932..1270363(-) (ymcA) [Bacillus subtilis strain 11060]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1