Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LU301_RS08340 Genome accession   NZ_CP089978
Coordinates   1682312..1683433 (-) Length   373 a.a.
NCBI ID   WP_305269716.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1677312..1688433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS08315 (LU301_08300) purE 1677720..1678220 (-) 501 WP_305269706.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LU301_RS08320 (LU301_08305) - 1678601..1679335 (-) 735 WP_305269710.1 sulfite exporter TauE/SafE family protein -
  LU301_RS08325 (LU301_08310) - 1679345..1681384 (-) 2040 WP_305269712.1 UvrD-helicase domain-containing protein -
  LU301_RS08330 (LU301_08315) - 1681590..1681817 (+) 228 WP_305269714.1 WG repeat-containing protein -
  LU301_RS08335 (LU301_08320) - 1681822..1682232 (+) 411 WP_370692253.1 WG repeat-containing protein -
  LU301_RS08340 (LU301_08325) pilU 1682312..1683433 (-) 1122 WP_305269716.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LU301_RS08345 (LU301_08330) proC 1683609..1684418 (-) 810 WP_305269718.1 pyrroline-5-carboxylate reductase -
  LU301_RS08350 (LU301_08335) tilS 1684420..1685784 (-) 1365 WP_305269720.1 tRNA lysidine(34) synthetase TilS -
  LU301_RS08355 (LU301_08340) - 1685721..1686566 (-) 846 WP_305269723.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  LU301_RS08360 (LU301_08345) ppx 1686591..1688102 (-) 1512 WP_305269724.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 42015.25 Da        Isoelectric Point: 6.5067

>NTDB_id=639632 LU301_RS08340 WP_305269716.1 1682312..1683433(-) (pilU) [Moraxella sp. ZY210820]
MDFNDLLNMMVAQKASDLFVTADVEPSMKIHGQIVPVAKTKLTGEMVGQIIHSIMTDRQRKEFVETRECNFAITNRENTA
RFRVSAFQQRDQPGMVLRRIETVIPTMEELRLPPVLKELSMTKRGIIIFVGATGTGKSTSLASMISYRNHNSKGHIITLE
DPIEFVHQHAGCIITQREVGIDTESFEVGLKNTLRQAPDVILIGEIRSRETMDYAIAFAETGHLVFATLHANNANQAVDR
IIHFFEADRHSQLFMDLSLNLRAMIAQQLIPTVDGKGRRAAIEIMINSPLISDYIRKGEVHELKELMRRSRELGMQTFDQ
ALFDLYKAGEITYENALKHADSPNDLRLLIKLDAEGASDALYSATKNITFDGQ

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=639632 LU301_RS08340 WP_305269716.1 1682312..1683433(-) (pilU) [Moraxella sp. ZY210820]
ATGGATTTTAATGATTTACTCAATATGATGGTAGCACAAAAAGCGTCAGACTTATTTGTTACTGCTGATGTTGAACCATC
GATGAAAATTCACGGACAAATTGTACCAGTGGCAAAAACAAAACTGACAGGCGAAATGGTAGGTCAAATTATTCATTCAA
TTATGACTGACCGTCAGCGTAAAGAGTTTGTGGAAACACGTGAATGTAACTTTGCGATTACGAACCGTGAAAATACGGCT
CGTTTTCGTGTGAGTGCATTCCAACAACGAGACCAGCCGGGAATGGTACTACGCCGTATTGAAACAGTTATTCCAACCAT
GGAAGAGTTGCGTTTACCGCCTGTTTTAAAAGAATTATCGATGACCAAACGTGGGATTATTATTTTCGTAGGGGCGACAG
GTACAGGTAAATCAACATCGTTAGCTTCAATGATTAGCTATCGTAACCATAATTCTAAAGGACATATTATTACCCTTGAA
GACCCAATTGAATTTGTACATCAGCACGCTGGTTGTATTATTACACAACGTGAAGTGGGGATTGATACAGAATCATTTGA
AGTTGGTCTAAAAAATACCCTTCGTCAAGCACCAGATGTGATTTTGATTGGTGAAATTCGTTCTCGTGAGACGATGGATT
ATGCGATTGCCTTTGCCGAAACAGGGCATTTGGTATTTGCTACACTGCACGCTAATAACGCAAACCAAGCAGTCGATCGT
ATTATTCACTTCTTTGAAGCTGACCGCCATAGTCAATTATTTATGGATTTATCGCTTAACTTGCGTGCCATGATTGCACA
ACAACTGATTCCAACGGTTGATGGTAAGGGTCGCCGTGCAGCAATTGAAATTATGATTAACTCGCCGTTAATTTCGGATT
ATATTCGTAAAGGCGAAGTACATGAGTTAAAAGAATTAATGCGTCGTTCTCGTGAATTAGGTATGCAAACTTTTGACCAA
GCTTTATTTGACTTATATAAAGCAGGTGAAATTACCTATGAAAATGCATTAAAACACGCAGACTCTCCAAACGATTTACG
TCTATTAATCAAATTGGATGCTGAAGGGGCAAGCGATGCCTTATATAGTGCAACCAAAAATATTACCTTTGATGGGCAAT
AA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Acinetobacter baylyi ADP1

72.487

100

0.735
  pilU Pseudomonas stutzeri DSM 10701

67.655

99.464

0.673
  pilU Vibrio cholerae strain A1552

55.462

95.71

0.531
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40

97.855

0.391
  pilT Legionella pneumophila strain ERS1305867

42.56

90.08

0.383
  pilT Legionella pneumophila strain Lp02

42.56

90.08

0.383
  pilT Pseudomonas aeruginosa PAK

41.329

92.761

0.383
  pilT Acinetobacter baumannii D1279779

41.108

91.957

0.378
  pilT Acinetobacter nosocomialis M2

41.108

91.957

0.378
  pilT Acinetobacter baumannii strain A118

41.108

91.957

0.378
  pilT Acinetobacter baylyi ADP1

40.525

91.957

0.373
  pilT Pseudomonas stutzeri DSM 10701

39.884

92.761

0.37
  pilT Neisseria gonorrhoeae MS11

40.294

91.153

0.367
  pilT Vibrio cholerae strain A1552

42.812

85.791

0.367
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

42.812

85.791

0.367
  pilT Neisseria meningitidis 8013

40.058

91.689

0.367