Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LU297_RS07555 Genome accession   NZ_CP089977
Coordinates   1611672..1612712 (-) Length   346 a.a.
NCBI ID   WP_263075922.1    Uniprot ID   -
Organism   Moraxella nasicaprae strain ZY201224     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606672..1617712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU297_RS07530 (LU297_07530) - 1607668..1608645 (+) 978 WP_263075917.1 DUF1852 domain-containing protein -
  LU297_RS07535 (LU297_07535) - 1608743..1609777 (+) 1035 WP_263075918.1 methionine synthase -
  LU297_RS07540 (LU297_07540) - 1609889..1610362 (+) 474 WP_263075919.1 flavin reductase -
  LU297_RS07545 (LU297_07545) bamE 1610549..1610926 (-) 378 WP_263075920.1 outer membrane protein assembly factor BamE -
  LU297_RS07550 (LU297_07550) fur 1611167..1611601 (+) 435 WP_263075921.1 ferric iron uptake transcriptional regulator -
  LU297_RS07555 (LU297_07555) pilT 1611672..1612712 (-) 1041 WP_263075922.1 type IV pilus twitching motility protein PilT Machinery gene
  LU297_RS07560 (LU297_07560) - 1612810..1613490 (+) 681 WP_263075923.1 YggS family pyridoxal phosphate-dependent enzyme -
  LU297_RS07565 (LU297_07565) - 1613544..1614770 (+) 1227 WP_263075925.1 NnrS family protein -
  LU297_RS07570 (LU297_07570) - 1615026..1616714 (-) 1689 WP_263075926.1 NAD+ synthase -
  LU297_RS07575 (LU297_07575) - 1616904..1617155 (+) 252 WP_263075927.1 hypothetical protein -
  LU297_RS07580 (LU297_07580) - 1617199..1617582 (-) 384 WP_263075928.1 cell division protein ZapA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38090.03 Da        Isoelectric Point: 7.1267

>NTDB_id=639610 LU297_RS07555 WP_263075922.1 1611672..1612712(-) (pilT) [Moraxella nasicaprae strain ZY201224]
MNPATSLTDLLRQTLLQGASDLHLSAHQPMMMRLHGVMTPIALPPPDDATVRAWLQSIMSQAQYDQWCHRMELDFAIELD
SVARFRVNAFHHRLGAGAVFRCIANQPPTLESLNAPPIFAQLCQKKQGLILVTGATGSGKSTTLAAMIDHINRHQASHIL
TIEDPIEFIHQSKRSLVNQREVYKDTLDFQLALKAALREDPDVILVGELRDAQTVRLALTAAETGHLVLATLHTNSAAKS
IDRLVDVFDSQEKPLIATMLSECLQAVIAQKLLPNTQGERTAIHEIMIATPAIKNLIREHKTHQIPSMIGTGAAFGMSSF
EHGLKHLLAQGKISQAVAKDVLEQLH

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=639610 LU297_RS07555 WP_263075922.1 1611672..1612712(-) (pilT) [Moraxella nasicaprae strain ZY201224]
ATGAATCCAGCAACCAGCCTGACCGATTTGCTTCGCCAAACCCTCCTACAAGGTGCGTCCGATTTGCACCTATCTGCCCA
TCAGCCAATGATGATGCGACTGCATGGCGTGATGACACCCATTGCCTTACCACCGCCTGACGATGCAACCGTGCGAGCAT
GGCTACAATCCATCATGAGTCAAGCACAATATGACCAATGGTGTCATCGCATGGAGTTAGACTTTGCTATTGAGCTAGAT
AGCGTGGCACGATTTCGTGTTAATGCCTTTCATCACAGATTGGGGGCTGGAGCGGTGTTTCGCTGCATTGCCAATCAGCC
ACCCACGCTAGAATCCCTCAACGCCCCGCCCATTTTTGCTCAATTATGTCAGAAAAAACAAGGGCTTATCTTAGTAACAG
GAGCGACAGGGTCGGGCAAATCCACCACACTGGCGGCGATGATTGACCACATCAACCGTCATCAAGCATCGCACATTTTG
ACGATTGAAGACCCTATTGAGTTCATTCATCAATCCAAACGCTCACTTGTCAATCAGCGAGAAGTGTATAAAGACACGCT
TGATTTTCAATTAGCACTCAAAGCCGCTTTACGAGAAGACCCTGATGTGATTTTGGTGGGAGAATTGCGAGATGCTCAGA
CCGTTCGCCTTGCTCTGACCGCCGCTGAAACAGGGCATTTGGTGCTGGCAACGCTACACACCAATTCTGCCGCCAAAAGT
ATTGACCGCTTGGTCGATGTATTTGACAGTCAAGAAAAGCCATTGATTGCCACAATGCTATCTGAGTGCTTACAGGCGGT
CATCGCCCAAAAACTACTGCCAAACACACAAGGAGAGCGTACGGCAATCCATGAGATTATGATTGCCACGCCAGCCATCA
AAAATCTTATTCGTGAACATAAAACCCACCAAATCCCATCAATGATTGGCACGGGAGCGGCATTTGGCATGAGCAGCTTT
GAGCATGGTCTAAAACATCTGCTGGCACAAGGCAAAATCAGCCAAGCGGTTGCCAAAGATGTGTTGGAGCAGTTACACTA
G

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

56.213

97.688

0.549
  pilT Acinetobacter baylyi ADP1

55.821

96.821

0.54
  pilT Pseudomonas aeruginosa PAK

55.689

96.532

0.538
  pilT Acinetobacter baumannii D1279779

54.734

97.688

0.535
  pilT Acinetobacter baumannii strain A118

54.734

97.688

0.535
  pilT Acinetobacter nosocomialis M2

54.438

97.688

0.532
  pilT Neisseria meningitidis 8013

54.491

96.532

0.526
  pilT Neisseria gonorrhoeae MS11

54.192

96.532

0.523
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

55.352

94.509

0.523
  pilT Vibrio cholerae strain A1552

55.352

94.509

0.523
  pilT Legionella pneumophila strain Lp02

53.313

95.954

0.512
  pilT Legionella pneumophila strain ERS1305867

53.313

95.954

0.512
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.024

95.087

0.457
  pilU Vibrio cholerae strain A1552

40.663

95.954

0.39
  pilU Acinetobacter baylyi ADP1

40.12

96.532

0.387
  pilU Pseudomonas stutzeri DSM 10701

41.104

94.22

0.387