Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LU293_RS02165 Genome accession   NZ_CP089976
Coordinates   433369..434412 (+) Length   347 a.a.
NCBI ID   WP_242748289.1    Uniprot ID   -
Organism   Moraxella nasovis strain ZY201115     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428369..439412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU293_RS02135 (LU293_02135) - 428662..429291 (-) 630 WP_242748283.1 UPF0149 family protein -
  LU293_RS02140 (LU293_02140) - 429486..429848 (+) 363 WP_242748284.1 hypothetical protein -
  LU293_RS02145 (LU293_02145) zapA 429867..430253 (+) 387 WP_242748285.1 cell division protein ZapA -
  LU293_RS02150 (LU293_02150) - 430282..430536 (-) 255 WP_242748286.1 hypothetical protein -
  LU293_RS02155 (LU293_02155) - 430737..432425 (+) 1689 WP_242748287.1 NAD+ synthase -
  LU293_RS02160 (LU293_02160) - 432490..433191 (-) 702 WP_242748288.1 YggS family pyridoxal phosphate-dependent enzyme -
  LU293_RS02165 (LU293_02165) pilT 433369..434412 (+) 1044 WP_242748289.1 type IV pilus twitching motility protein PilT Machinery gene
  LU293_RS02170 (LU293_02170) - 434516..435289 (-) 774 WP_242748290.1 hypothetical protein -
  LU293_RS02175 (LU293_02175) - 435606..436010 (-) 405 WP_242748291.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LU293_RS02180 (LU293_02180) - 436026..438584 (-) 2559 WP_242748292.1 PilC/PilY family type IV pilus protein -
  LU293_RS02185 (LU293_02185) - 438571..439236 (-) 666 WP_242748293.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37775.42 Da        Isoelectric Point: 7.1439

>NTDB_id=639588 LU293_RS02165 WP_242748289.1 433369..434412(+) (pilT) [Moraxella nasovis strain ZY201115]
MTNTPNLNQLLAFVTHHHASDLHLSTGEPPIMRIDGQITRTDLPPLSADAAIALIKASMSDGQFDEFCSQKELDYALQIP
QVGRFRVNAFTHHRGVAAVFRHIPDSIPTLASLSFGAVFEKIATLSQGLVLITGATGSGKSTTLAAIIDHINHTQNKHIL
TIEDPIEFIHHAKYSLISQREVKRDTASFEQALKSALREDPDVILVGELRDLASIRLALTAAETGHLVLGTLHTASAVKT
IDRIVDVFNADDKAMIRTMLSESLQAVVSQSLLPKVGGGRIAAHEILISTPAIRHMIREHKLAQIHSAMQTGLNQGMTTL
DQALAKLVNQGLISQETSKIYTKDIKL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=639588 LU293_RS02165 WP_242748289.1 433369..434412(+) (pilT) [Moraxella nasovis strain ZY201115]
ATGACAAACACACCTAACCTTAATCAATTACTTGCATTTGTAACACATCATCACGCCTCCGACTTACACCTAAGTACTGG
CGAGCCGCCCATCATGCGTATAGACGGGCAAATTACTCGCACTGATTTACCGCCGCTTAGTGCTGATGCTGCGATTGCAC
TTATCAAAGCTTCCATGTCAGATGGTCAGTTTGATGAATTTTGTTCCCAAAAAGAGCTAGATTACGCCTTACAAATTCCT
CAAGTTGGGAGATTTCGTGTCAATGCTTTTACTCATCATCGTGGTGTAGCGGCTGTTTTTCGCCACATTCCAGATAGCAT
TCCTACGTTAGCCTCGCTATCTTTTGGGGCTGTTTTTGAGAAAATCGCCACATTATCACAAGGTCTAGTACTCATCACAG
GGGCGACAGGCTCTGGTAAATCTACCACACTAGCCGCCATCATTGACCATATCAACCACACCCAAAATAAGCACATACTC
ACCATCGAAGATCCCATCGAGTTTATCCATCATGCTAAATACTCCCTAATTAGTCAGCGTGAAGTTAAAAGAGATACGGC
AAGCTTTGAGCAAGCATTAAAGTCCGCTTTGCGTGAAGATCCTGATGTTATCTTAGTGGGTGAGCTACGTGATTTGGCAA
GTATTCGCTTAGCACTCACCGCCGCTGAAACAGGTCATCTGGTGCTAGGAACGCTACATACTGCTAGTGCGGTAAAGACA
ATTGATAGGATTGTGGATGTGTTTAATGCAGATGATAAGGCAATGATTCGCACCATGCTCTCAGAATCGCTACAGGCAGT
TGTCAGCCAGTCATTATTGCCAAAAGTCGGTGGCGGAAGAATAGCGGCTCACGAAATTCTCATCAGCACGCCTGCCATTC
GTCATATGATACGAGAACATAAATTAGCCCAAATCCACTCAGCCATGCAAACTGGTCTGAACCAAGGCATGACAACGCTT
GATCAAGCACTAGCTAAGCTTGTCAATCAGGGGCTTATCAGCCAAGAAACGAGCAAAATCTACACAAAAGATATTAAATT
GTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(15-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

59.581

96.254

0.573
  pilT Pseudomonas stutzeri DSM 10701

59.581

96.254

0.573
  pilT Acinetobacter nosocomialis M2

57.988

97.406

0.565
  pilT Acinetobacter baumannii D1279779

57.988

97.406

0.565
  pilT Acinetobacter baumannii strain A118

57.988

97.406

0.565
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

56.725

98.559

0.559
  pilT Vibrio cholerae strain A1552

56.725

98.559

0.559
  pilT Acinetobacter baylyi ADP1

57.396

97.406

0.559
  pilT Legionella pneumophila strain ERS1305867

57.357

95.965

0.55
  pilT Legionella pneumophila strain Lp02

57.357

95.965

0.55
  pilT Neisseria meningitidis 8013

57.1

95.389

0.545
  pilT Neisseria gonorrhoeae MS11

57.1

95.389

0.545
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.665

97.118

0.473
  pilU Acinetobacter baylyi ADP1

41.692

95.389

0.398
  pilU Pseudomonas stutzeri DSM 10701

40

99.424

0.398
  pilU Vibrio cholerae strain A1552

41.088

95.389

0.392