Detailed information NTG0639468

Bioinformatically predicted

Overview

• Name: pilE
• Type: Machinery gene
• Locus tag: LR085_RS05270
• Genome accession: NZ_CP089952
• Coordinates: 1239058..1239498 (+)
• Length: 146 a.a.
• NCBI ID: WP_011038214.1
• Uniprot ID: Q8P671
• Organism: Xanthomonas campestris pv. campestris strain SB80
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1234058..1244498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LR085_RS05240 (LR085_05240)	-	1234182..1234673 (-)	492	WP_011038220.1	GNAT family N-acetyltransferase	-
LR085_RS05245 (LR085_05245)	-	1234670..1234960 (-)	291	WP_011038219.1	DUF1778 domain-containing protein	-
LR085_RS05250 (LR085_05250)	-	1235035..1235436 (-)	402	WP_019237348.1	SymE family type I addiction module toxin	-
LR085_RS05255 (LR085_05255)	coaE	1235968..1236591 (-)	624	WP_011038217.1	dephospho-CoA kinase	-
LR085_RS05260 (LR085_05260)	-	1236605..1237468 (-)	864	WP_011038216.1	A24 family peptidase	-
LR085_RS05265 (LR085_05265)	pilC	1237475..1238731 (-)	1257	WP_011038215.1	type II secretion system F family protein	Machinery gene
LR085_RS05270 (LR085_05270)	pilE	1239058..1239498 (+)	441	WP_011038214.1	pilin	Machinery gene
LR085_RS05275 (LR085_05275)	-	1239578..1240012 (+)	435	WP_011038213.1	pilin	-
LR085_RS05280 (LR085_05280)	pilB	1240077..1241809 (+)	1733	Protein_1030	type IV-A pilus assembly ATPase PilB	-
LR085_RS05290 (LR085_05290)	pilR	1242228..1243622 (-)	1395	WP_012437607.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 146 a.a.
• Molecular weight: 14797.93 Da
• Isoelectric Point: 9.0090

>NTDB_id=639468 LR085_RS05270 WP_011038214.1 1239058..1239498(+) (pilE) [Xanthomonas campestris pv. campestris strain SB80]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPATNAAAGLEAAANIKG
KYVTSVTVGAGGIITAAFNTANAKLSGKNLVLTPTDNNGSISWGCTNGTTIDQKYLPTSCRTAAAP

Nucleotide

• Length: 441 bp

>NTDB_id=639468 LR085_RS05270 WP_011038214.1 1239058..1239498(+) (pilE) [Xanthomonas campestris pv. campestris strain SB80]
ATGAAAAAGCAAAATGGTTTTACACTGATCGAACTCATGATCGTCGTTGCGATCATCGCTATTCTGGCCGCTATCGCTTT
GCCGGCGTACCAGGATTACCTCGCTCGTTCGCAGGTTTCGGAAGGCTTGTCTTTGGCGTCGGGTGCAAAGACAGCTGTCG
CTGAAACTTATGCTAACACCGGTGCCTTCCCGGCGACCAATGCCGCCGCTGGCCTTGAGGCTGCTGCGAACATCAAGGGT
AAGTACGTTACGTCTGTGACGGTGGGGGCGGGTGGGATCATCACCGCGGCATTCAATACTGCTAATGCAAAGTTGAGTGG
CAAGAATCTGGTCCTGACCCCGACTGACAATAACGGTTCGATCAGCTGGGGGTGCACCAACGGCACCACGATTGATCAGA
AGTATCTGCCGACCTCTTGCCGCACTGCGGCGGCTCCGTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (35-141)

3D structure

• AlphaFold DB: Q8P671

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilE	Neisseria gonorrhoeae MS11	46.875	100	0.514
pilE	Neisseria gonorrhoeae strain FA1090	46.541	100	0.507
pilA2	Legionella pneumophila str. Paris	52.857	95.89	0.507
pilA2	Legionella pneumophila strain ERS1305867	52.143	95.89	0.5
pilA/pilA1	Eikenella corrodens VA1	46.452	100	0.493
comP	Acinetobacter baylyi ADP1	48	100	0.493
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	37.5	100	0.473
pilA	Ralstonia pseudosolanacearum GMI1000	40.244	100	0.452
pilA	Acinetobacter baumannii strain A118	41.333	100	0.425
pilA	Pseudomonas aeruginosa PAK	40.789	100	0.425
pilA	Vibrio campbellii strain DS40M4	40.268	100	0.411
pilA	Vibrio cholerae C6706	38.411	100	0.397
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	38.411	100	0.397
pilA	Vibrio cholerae strain A1552	38.411	100	0.397
pilA/pilAI	Pseudomonas stutzeri DSM 10701	40.288	95.205	0.384
pilA	Vibrio parahaemolyticus RIMD 2210633	42.4	85.616	0.363