NTDB

Overview

Name	pilA/pilAI	Type	Machinery gene
Locus tag	LTC53_RS14885	Genome accession	NZ_CP089584
Coordinates	3435786..3436196 (-)	Length	136 a.a.
NCBI ID	WP_235049045.1	Uniprot ID	-
Organism	Xanthomonas translucens pv. undulosa strain MAI5034
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3430786..3441196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTC53_RS14860 (LTC53_14860)	pilR	3430949..3432337 (+)	1389	WP_068873433.1	sigma-54 dependent transcriptional regulator	Regulator
LTC53_RS14865 (LTC53_14865)	-	3432526..3432708 (+)	183	WP_068873434.1	YhfG family protein	-
LTC53_RS14870 (LTC53_14870)	-	3432705..3433157 (+)	453	WP_235049043.1	Fic family protein	-
LTC53_RS14875 (LTC53_14875)	pilB	3433332..3435068 (-)	1737	WP_206710335.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LTC53_RS14880 (LTC53_14880)	-	3435331..3435699 (+)	369	WP_235049044.1	hypothetical protein	-
LTC53_RS14885 (LTC53_14885)	pilA/pilAI	3435786..3436196 (-)	411	WP_235049045.1	pilin	Machinery gene
LTC53_RS14890 (LTC53_14890)	pilC	3436580..3437839 (+)	1260	WP_003466392.1	type II secretion system F family protein	Machinery gene
LTC53_RS14895 (LTC53_14895)	-	3437846..3438709 (+)	864	WP_058359048.1	A24 family peptidase	-
LTC53_RS14900 (LTC53_14900)	coaE	3438723..3439343 (+)	621	WP_003477105.1	dephospho-CoA kinase	-
LTC53_RS14905 (LTC53_14905)	-	3439468..3440802 (-)	1335	WP_235049046.1	HAMP domain-containing sensor histidine kinase	-

Sequence

Protein

Download Length: 136 a.a. Molecular weight: 14119.54 Da Isoelectric Point: 8.4919

                                >NTDB_id=638118 LTC53_RS14885 WP_235049045.1 3435786..3436196(-) (pilA/pilAI) [Xanthomonas translucens pv. undulosa strain MAI5034]

MKKQQGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKAQYEVALNEGKTSIAGIGDLGLKSPTDRCT

IGDITALSATGSIVCTLKGNTQVLNKTITLTRKTDGSWTCATTVLAKHAPAGCPGV

Nucleotide

Download Length: 411 bp

                                >NTDB_id=638118 LTC53_RS14885 WP_235049045.1 3435786..3436196(-) (pilA/pilAI) [Xanthomonas translucens pv. undulosa strain MAI5034]

ATGAAGAAGCAGCAGGGCTTTACGCTGATCGAACTGATGATCGTCATTGCGATCATTGCCATCCTGGCCGCCATTGCGCT

GCCGATGTACCAGGATTATGTTGCCAAGTCGCAAGTAACCGCTGGTCTTGCTGAGATCAACCCGGGTAAGGCACAGTACG

AAGTTGCATTGAACGAAGGTAAGACCTCTATTGCCGGCATCGGCGATCTTGGTTTGAAGTCTCCTACTGACCGTTGCACC

ATCGGGGACATTACTGCCCTGAGTGCCACGGGAAGCATCGTTTGTACGTTGAAGGGTAACACCCAGGTTCTCAATAAGAC

AATTACCCTGACCCGTAAGACTGATGGTTCCTGGACTTGTGCTACTACTGTTTTGGCGAAGCACGCTCCGGCTGGTTGCC

CGGGTGTTTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA/pilAI	Pseudomonas stutzeri DSM 10701	52.632	97.794	0.515
pilA	Acinetobacter baumannii strain A118	50.365	100	0.507
pilA/pilAII	Pseudomonas stutzeri DSM 10701	47.059	100	0.471
pilA	Pseudomonas aeruginosa PAK	40.541	100	0.441
pilA2	Legionella pneumophila str. Paris	43.796	100	0.441
pilA2	Legionella pneumophila strain ERS1305867	43.066	100	0.434
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	41.549	100	0.434
pilA	Vibrio cholerae C6706	41.549	100	0.434
pilA	Vibrio cholerae strain A1552	41.549	100	0.434
comP	Acinetobacter baylyi ADP1	37.584	100	0.412
pilE	Neisseria gonorrhoeae MS11	38.849	100	0.397
pilE	Neisseria gonorrhoeae strain FA1090	37.857	100	0.39
pilA	Vibrio parahaemolyticus RIMD 2210633	39.844	94.118	0.375
pilA/pilA1	Eikenella corrodens VA1	36.496	100	0.368
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.2	91.912	0.36

Detailed information NTG0638118