Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LTC53_RS14860 Genome accession   NZ_CP089584
Coordinates   3430949..3432337 (+) Length   462 a.a.
NCBI ID   WP_068873433.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain MAI5034     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3422731..3433157 3430949..3432337 within 0


Gene organization within MGE regions


Location: 3422731..3433157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTC53_RS14830 (LTC53_14830) - 3422731..3425010 (+) 2280 WP_235049039.1 hypothetical protein -
  LTC53_RS14835 (LTC53_14835) - 3425123..3425428 (-) 306 WP_235049040.1 hypothetical protein -
  LTC53_RS14840 (LTC53_14840) - 3425377..3426675 (-) 1299 WP_235049041.1 hypothetical protein -
  LTC53_RS14845 (LTC53_14845) sucD 3426961..3427833 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  LTC53_RS14850 (LTC53_14850) sucC 3427857..3429020 (-) 1164 WP_235049042.1 ADP-forming succinate--CoA ligase subunit beta -
  LTC53_RS14855 (LTC53_14855) - 3429261..3430874 (+) 1614 WP_003466376.1 ATP-binding protein -
  LTC53_RS14860 (LTC53_14860) pilR 3430949..3432337 (+) 1389 WP_068873433.1 sigma-54 dependent transcriptional regulator Regulator
  LTC53_RS14865 (LTC53_14865) - 3432526..3432708 (+) 183 WP_068873434.1 YhfG family protein -
  LTC53_RS14870 (LTC53_14870) - 3432705..3433157 (+) 453 WP_235049043.1 Fic family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49835.34 Da        Isoelectric Point: 6.8915

>NTDB_id=638116 LTC53_RS14860 WP_068873433.1 3430949..3432337(+) (pilR) [Xanthomonas translucens pv. undulosa strain MAI5034]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDAQISAADLHLPQPGNNARAAAEAAPV
LPPGVIDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=638116 LTC53_RS14860 WP_068873433.1 3430949..3432337(+) (pilR) [Xanthomonas translucens pv. undulosa strain MAI5034]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCAGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCAGAGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAAG
ACGCCCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAACGCCCGTGCCGCGGCCGAAGCCGCGCCCGTA
CTGCCGCCCGGCGTGATCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.438

99.351

0.61
  pilR Acinetobacter baumannii strain A118

47.845

100

0.481