Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | THY01S_RS00560 | Genome accession | NC_022795 |
| Coordinates | 108859..109917 (-) | Length | 352 a.a. |
| NCBI ID | WP_031504847.1 | Uniprot ID | A0A0X1KQR0 |
| Organism | Pseudothermotoga hypogea DSM 11164 = NBRC 106472 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 103859..114917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THY01S_RS00535 | flgA | 105276..105941 (+) | 666 | WP_031504840.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| THY01S_RS00540 | - | 105946..106539 (+) | 594 | WP_031504841.1 | flagellar basal body L-ring protein FlgH | - |
| THY01S_RS00545 | - | 106502..107542 (+) | 1041 | WP_096325182.1 | flagellar basal body P-ring protein FlgI | - |
| THY01S_RS00550 | - | 107543..107818 (+) | 276 | WP_051368687.1 | hypothetical protein | - |
| THY01S_RS00555 | prfA | 107810..108862 (-) | 1053 | WP_031504845.1 | peptide chain release factor 1 | - |
| THY01S_RS00560 | pilT | 108859..109917 (-) | 1059 | WP_031504847.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| THY01S_RS00565 | ileS | 109914..112649 (-) | 2736 | WP_031504849.1 | isoleucine--tRNA ligase | - |
| THY01S_RS00570 | - | 112663..113022 (-) | 360 | WP_031504851.1 | response regulator | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 39293.28 Da Isoelectric Point: 7.0342
>NTDB_id=63514 THY01S_RS00560 WP_031504847.1 108859..109917(-) (pilT) [Pseudothermotoga hypogea DSM 11164 = NBRC 106472]
MIDIHSLVSEAFAKGASDVHLSVGVPPIYRIDGVLVVQKQYAPVSAKDLLDAVQKIFEQLNITRSEDKKEVDFAFSVGDK
IRVRGNLYHERKNPALALRLITSRIRTFSELGLPEILKDFANRDSGLILVAGPTGSGKSTTLAAMIDYINENFPYHIITI
EDPIEYVFTNKRSIIHQRELGQDTNSFYDGLKYALRQDPDVILVGEMRDLETMALALTAAETGHLVLSTIHTNSAASAPE
RIIDVFPAHQQKQIALQVANTLIAIVYQRLLRHASGRGVVPVLEILVGTTAVKNLIRENKLHQIESIMQASAKQGMILFD
DALLKAYFSGLIDKNQLYEYCRNPEEMRRKIG
MIDIHSLVSEAFAKGASDVHLSVGVPPIYRIDGVLVVQKQYAPVSAKDLLDAVQKIFEQLNITRSEDKKEVDFAFSVGDK
IRVRGNLYHERKNPALALRLITSRIRTFSELGLPEILKDFANRDSGLILVAGPTGSGKSTTLAAMIDYINENFPYHIITI
EDPIEYVFTNKRSIIHQRELGQDTNSFYDGLKYALRQDPDVILVGEMRDLETMALALTAAETGHLVLSTIHTNSAASAPE
RIIDVFPAHQQKQIALQVANTLIAIVYQRLLRHASGRGVVPVLEILVGTTAVKNLIRENKLHQIESIMQASAKQGMILFD
DALLKAYFSGLIDKNQLYEYCRNPEEMRRKIG
Nucleotide
Download Length: 1059 bp
>NTDB_id=63514 THY01S_RS00560 WP_031504847.1 108859..109917(-) (pilT) [Pseudothermotoga hypogea DSM 11164 = NBRC 106472]
ATGATCGATATTCACTCCCTGGTGTCCGAGGCCTTCGCGAAGGGCGCTTCCGATGTTCATTTGTCGGTTGGAGTTCCTCC
GATCTACAGGATCGACGGGGTGCTCGTGGTTCAAAAGCAGTACGCACCCGTCAGTGCAAAGGATCTGCTCGACGCGGTTC
AGAAGATTTTCGAGCAGTTGAACATCACAAGAAGCGAAGACAAGAAAGAGGTAGATTTCGCCTTTTCCGTGGGAGACAAA
ATTAGGGTCAGAGGAAATCTTTACCACGAGAGAAAAAACCCCGCCCTCGCACTGAGGCTGATCACCAGCAGGATAAGGAC
CTTCAGTGAGTTGGGTTTACCTGAGATACTCAAAGACTTTGCCAACAGAGATTCTGGTCTGATTCTCGTCGCTGGGCCCA
CCGGCAGCGGTAAGTCCACGACTCTGGCGGCAATGATAGACTACATCAACGAGAACTTTCCGTACCACATCATCACCATC
GAAGATCCCATCGAGTACGTTTTCACCAACAAGAGATCGATCATCCACCAAAGAGAACTCGGTCAGGACACGAACAGTTT
CTACGATGGTCTCAAGTATGCGTTGAGGCAAGATCCAGACGTCATACTCGTCGGCGAAATGAGAGATCTGGAAACTATGG
CGCTGGCACTCACCGCTGCAGAGACAGGACATCTGGTTTTGAGCACGATACACACCAACAGCGCCGCGAGCGCCCCGGAA
AGGATCATAGATGTGTTTCCGGCACATCAGCAGAAACAAATTGCGCTTCAGGTGGCGAACACCCTCATCGCGATCGTGTA
TCAAAGATTGCTGAGGCACGCTTCGGGTAGAGGTGTCGTGCCAGTGTTGGAGATACTTGTGGGAACAACGGCGGTGAAGA
ACTTGATAAGGGAGAACAAGCTGCACCAGATAGAATCGATCATGCAGGCGAGTGCCAAGCAGGGTATGATCCTCTTCGAC
GATGCCCTGCTGAAGGCTTACTTTTCAGGTTTGATAGACAAAAACCAGCTTTACGAGTACTGTCGCAATCCAGAGGAAAT
GAGGAGAAAGATAGGATGA
ATGATCGATATTCACTCCCTGGTGTCCGAGGCCTTCGCGAAGGGCGCTTCCGATGTTCATTTGTCGGTTGGAGTTCCTCC
GATCTACAGGATCGACGGGGTGCTCGTGGTTCAAAAGCAGTACGCACCCGTCAGTGCAAAGGATCTGCTCGACGCGGTTC
AGAAGATTTTCGAGCAGTTGAACATCACAAGAAGCGAAGACAAGAAAGAGGTAGATTTCGCCTTTTCCGTGGGAGACAAA
ATTAGGGTCAGAGGAAATCTTTACCACGAGAGAAAAAACCCCGCCCTCGCACTGAGGCTGATCACCAGCAGGATAAGGAC
CTTCAGTGAGTTGGGTTTACCTGAGATACTCAAAGACTTTGCCAACAGAGATTCTGGTCTGATTCTCGTCGCTGGGCCCA
CCGGCAGCGGTAAGTCCACGACTCTGGCGGCAATGATAGACTACATCAACGAGAACTTTCCGTACCACATCATCACCATC
GAAGATCCCATCGAGTACGTTTTCACCAACAAGAGATCGATCATCCACCAAAGAGAACTCGGTCAGGACACGAACAGTTT
CTACGATGGTCTCAAGTATGCGTTGAGGCAAGATCCAGACGTCATACTCGTCGGCGAAATGAGAGATCTGGAAACTATGG
CGCTGGCACTCACCGCTGCAGAGACAGGACATCTGGTTTTGAGCACGATACACACCAACAGCGCCGCGAGCGCCCCGGAA
AGGATCATAGATGTGTTTCCGGCACATCAGCAGAAACAAATTGCGCTTCAGGTGGCGAACACCCTCATCGCGATCGTGTA
TCAAAGATTGCTGAGGCACGCTTCGGGTAGAGGTGTCGTGCCAGTGTTGGAGATACTTGTGGGAACAACGGCGGTGAAGA
ACTTGATAAGGGAGAACAAGCTGCACCAGATAGAATCGATCATGCAGGCGAGTGCCAAGCAGGGTATGATCCTCTTCGAC
GATGCCCTGCTGAAGGCTTACTTTTCAGGTTTGATAGACAAAAACCAGCTTTACGAGTACTGTCGCAATCCAGAGGAAAT
GAGGAGAAAGATAGGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.138 |
98.864 |
0.486 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.018 |
96.307 |
0.443 |
| pilT | Vibrio cholerae strain A1552 |
46.018 |
96.307 |
0.443 |
| pilT | Acinetobacter baumannii strain A118 |
45.058 |
97.727 |
0.44 |
| pilT | Acinetobacter nosocomialis M2 |
45.058 |
97.727 |
0.44 |
| pilT | Acinetobacter baumannii D1279779 |
45.058 |
97.727 |
0.44 |
| pilT | Acinetobacter baylyi ADP1 |
43.804 |
98.58 |
0.432 |
| pilT | Neisseria gonorrhoeae MS11 |
45.482 |
94.318 |
0.429 |
| pilT | Neisseria meningitidis 8013 |
45.482 |
94.318 |
0.429 |
| pilT | Legionella pneumophila strain ERS1305867 |
43.86 |
97.159 |
0.426 |
| pilT | Legionella pneumophila strain Lp02 |
43.86 |
97.159 |
0.426 |
| pilT | Pseudomonas stutzeri DSM 10701 |
42.939 |
98.58 |
0.423 |
| pilT | Pseudomonas aeruginosa PAK |
43.023 |
97.727 |
0.42 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.361 |
94.318 |
0.381 |
| pilU | Vibrio cholerae strain A1552 |
42.532 |
87.5 |
0.372 |
| pilU | Acinetobacter baylyi ADP1 |
35.674 |
100 |
0.361 |