Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | SPICUR_RS04130 | Genome accession | NC_022664 |
| Coordinates | 828467..829492 (+) | Length | 341 a.a. |
| NCBI ID | WP_023366348.1 | Uniprot ID | U5T2Q0 |
| Organism | Spiribacter curvatus | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 823467..834492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPICUR_RS04115 (SPICUR_04140) | - | 823988..825646 (-) | 1659 | WP_148291316.1 | hypothetical protein | - |
| SPICUR_RS10180 | - | 825745..826140 (-) | 396 | WP_076742135.1 | type II secretion system protein | - |
| SPICUR_RS04125 (SPICUR_04145) | - | 826317..828266 (-) | 1950 | WP_023366346.1 | O-antigen ligase family protein | - |
| SPICUR_RS04130 (SPICUR_04150) | pilT | 828467..829492 (+) | 1026 | WP_023366348.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| SPICUR_RS04135 (SPICUR_04155) | aceK | 829493..831226 (-) | 1734 | WP_023366350.1 | bifunctional isocitrate dehydrogenase kinase/phosphatase | - |
| SPICUR_RS04140 (SPICUR_04160) | icd | 831266..832564 (-) | 1299 | WP_023366352.1 | NADP-dependent isocitrate dehydrogenase | - |
| SPICUR_RS04145 (SPICUR_04165) | ppk2 | 832658..833404 (+) | 747 | WP_077176384.1 | polyphosphate kinase 2 | - |
Sequence
Protein
Download Length: 341 a.a. Molecular weight: 36764.75 Da Isoelectric Point: 5.7144
>NTDB_id=63269 SPICUR_RS04130 WP_023366348.1 828467..829492(+) (pilT) [Spiribacter curvatus]
MDLKALIVRAVELGASDLHVAAGGPPVIRVDGDLSTLSDEQVSHKALEKALFEVMDEAQQAQYRDHREVDFALQVENAGR
FRVNVYEQINGPGVVLRAIPAEIPALDDLGAPPVIHQVADRARGLVLVTGPTGSGKSTTLAAMVDHRNRQYPEHILTIED
PVEFVHHSNKALITQREVGHHTVDVQHALRAALREDPDVILVGELRDPDTIRLALTAAETGHLVFGTLHTRTAASSIDRI
INTFPGDEQAQVRAMLAESLLAVISQTLLKREGGGRVAGFEIMMAVPAIRNLIRDSNLAQIPNALQTGQASGMQTMGQSI
NQLQRQGLISPEAARAATGEA
MDLKALIVRAVELGASDLHVAAGGPPVIRVDGDLSTLSDEQVSHKALEKALFEVMDEAQQAQYRDHREVDFALQVENAGR
FRVNVYEQINGPGVVLRAIPAEIPALDDLGAPPVIHQVADRARGLVLVTGPTGSGKSTTLAAMVDHRNRQYPEHILTIED
PVEFVHHSNKALITQREVGHHTVDVQHALRAALREDPDVILVGELRDPDTIRLALTAAETGHLVFGTLHTRTAASSIDRI
INTFPGDEQAQVRAMLAESLLAVISQTLLKREGGGRVAGFEIMMAVPAIRNLIRDSNLAQIPNALQTGQASGMQTMGQSI
NQLQRQGLISPEAARAATGEA
Nucleotide
Download Length: 1026 bp
>NTDB_id=63269 SPICUR_RS04130 WP_023366348.1 828467..829492(+) (pilT) [Spiribacter curvatus]
ATGGATCTTAAAGCACTGATCGTTCGCGCCGTGGAGTTGGGCGCGTCCGATCTTCATGTCGCCGCCGGCGGCCCACCCGT
CATTCGTGTGGATGGCGACCTGAGCACTCTCAGCGACGAACAGGTCAGCCACAAGGCGCTTGAGAAGGCGCTGTTCGAGG
TCATGGACGAGGCGCAGCAGGCTCAGTACCGCGACCACCGCGAGGTGGACTTCGCCCTGCAGGTCGAGAACGCGGGGCGC
TTTCGTGTCAACGTCTACGAGCAGATCAACGGCCCGGGGGTCGTGCTGCGCGCGATCCCCGCGGAGATCCCGGCGCTCGA
TGACCTCGGCGCGCCCCCGGTCATTCACCAGGTCGCGGATCGCGCCCGCGGCCTGGTGCTCGTCACCGGCCCAACTGGCT
CGGGTAAGTCAACGACCCTCGCGGCGATGGTCGATCACCGTAATCGCCAGTATCCGGAGCACATCCTCACCATTGAGGAT
CCGGTGGAGTTCGTCCATCACTCCAACAAGGCGCTGATCACCCAGCGCGAGGTGGGTCACCATACGGTCGACGTCCAGCA
CGCCCTGCGAGCGGCCCTGCGCGAAGACCCCGACGTCATTCTGGTCGGTGAGCTGCGTGACCCCGATACCATCCGTCTGG
CGCTGACCGCCGCGGAGACCGGGCATCTGGTCTTTGGCACGCTGCATACGCGGACCGCGGCCAGCAGCATTGACCGGATC
ATCAATACCTTCCCGGGTGATGAGCAGGCGCAGGTGCGGGCGATGCTCGCCGAGTCGCTGCTCGCGGTGATCTCGCAGAC
GCTGCTCAAGCGCGAGGGCGGCGGCCGAGTGGCCGGGTTCGAGATCATGATGGCGGTGCCCGCGATCCGGAATCTGATCC
GCGACAGCAACCTGGCGCAGATTCCCAATGCGCTGCAGACCGGTCAGGCCAGCGGCATGCAGACCATGGGGCAGTCCATC
AACCAGCTCCAGCGTCAGGGGCTGATCTCCCCGGAGGCGGCCAGGGCCGCCACCGGTGAGGCCTGA
ATGGATCTTAAAGCACTGATCGTTCGCGCCGTGGAGTTGGGCGCGTCCGATCTTCATGTCGCCGCCGGCGGCCCACCCGT
CATTCGTGTGGATGGCGACCTGAGCACTCTCAGCGACGAACAGGTCAGCCACAAGGCGCTTGAGAAGGCGCTGTTCGAGG
TCATGGACGAGGCGCAGCAGGCTCAGTACCGCGACCACCGCGAGGTGGACTTCGCCCTGCAGGTCGAGAACGCGGGGCGC
TTTCGTGTCAACGTCTACGAGCAGATCAACGGCCCGGGGGTCGTGCTGCGCGCGATCCCCGCGGAGATCCCGGCGCTCGA
TGACCTCGGCGCGCCCCCGGTCATTCACCAGGTCGCGGATCGCGCCCGCGGCCTGGTGCTCGTCACCGGCCCAACTGGCT
CGGGTAAGTCAACGACCCTCGCGGCGATGGTCGATCACCGTAATCGCCAGTATCCGGAGCACATCCTCACCATTGAGGAT
CCGGTGGAGTTCGTCCATCACTCCAACAAGGCGCTGATCACCCAGCGCGAGGTGGGTCACCATACGGTCGACGTCCAGCA
CGCCCTGCGAGCGGCCCTGCGCGAAGACCCCGACGTCATTCTGGTCGGTGAGCTGCGTGACCCCGATACCATCCGTCTGG
CGCTGACCGCCGCGGAGACCGGGCATCTGGTCTTTGGCACGCTGCATACGCGGACCGCGGCCAGCAGCATTGACCGGATC
ATCAATACCTTCCCGGGTGATGAGCAGGCGCAGGTGCGGGCGATGCTCGCCGAGTCGCTGCTCGCGGTGATCTCGCAGAC
GCTGCTCAAGCGCGAGGGCGGCGGCCGAGTGGCCGGGTTCGAGATCATGATGGCGGTGCCCGCGATCCGGAATCTGATCC
GCGACAGCAACCTGGCGCAGATTCCCAATGCGCTGCAGACCGGTCAGGCCAGCGGCATGCAGACCATGGGGCAGTCCATC
AACCAGCTCCAGCGTCAGGGGCTGATCTCCCCGGAGGCGGCCAGGGCCGCCACCGGTGAGGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
55.952 |
98.534 |
0.551 |
| pilT | Vibrio cholerae strain A1552 |
55.952 |
98.534 |
0.551 |
| pilT | Acinetobacter nosocomialis M2 |
55.49 |
98.827 |
0.548 |
| pilT | Acinetobacter baumannii D1279779 |
55.49 |
98.827 |
0.548 |
| pilT | Acinetobacter baumannii strain A118 |
55.49 |
98.827 |
0.548 |
| pilT | Neisseria gonorrhoeae MS11 |
55.357 |
98.534 |
0.545 |
| pilT | Neisseria meningitidis 8013 |
55.357 |
98.534 |
0.545 |
| pilT | Acinetobacter baylyi ADP1 |
55.06 |
98.534 |
0.543 |
| pilT | Pseudomonas aeruginosa PAK |
54.627 |
98.24 |
0.537 |
| pilT | Legionella pneumophila strain Lp02 |
54.006 |
98.827 |
0.534 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.006 |
98.827 |
0.534 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.731 |
98.24 |
0.528 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.036 |
97.067 |
0.466 |
| pilU | Vibrio cholerae strain A1552 |
42.368 |
94.135 |
0.399 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.299 |
98.24 |
0.396 |
| pilU | Acinetobacter baylyi ADP1 |
37.651 |
97.361 |
0.367 |