Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LPW11_RS06940 | Genome accession | NZ_CP087999 |
| Coordinates | 1617915..1618979 (-) | Length | 354 a.a. |
| NCBI ID | WP_230997399.1 | Uniprot ID | - |
| Organism | Geomonas sp. RF6 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1612915..1623979
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPW11_RS06930 (LPW11_06930) | - | 1613154..1613294 (-) | 141 | WP_230997397.1 | hypothetical protein | - |
| LPW11_RS06935 (LPW11_06935) | - | 1613633..1617589 (+) | 3957 | WP_230997398.1 | methyl-accepting chemotaxis protein | - |
| LPW11_RS06940 (LPW11_06940) | pilT | 1617915..1618979 (-) | 1065 | WP_230997399.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LPW11_RS06945 (LPW11_06945) | - | 1618992..1620650 (-) | 1659 | WP_230997400.1 | ATPase, T2SS/T4P/T4SS family | - |
| LPW11_RS06950 (LPW11_06950) | - | 1620892..1621896 (+) | 1005 | WP_230997401.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39403.57 Da Isoelectric Point: 7.2514
>NTDB_id=632220 LPW11_RS06940 WP_230997399.1 1617915..1618979(-) (pilT) [Geomonas sp. RF6]
MARIDALFKLMSDKGASDLHLSTGAPPIFRVRGEMERQNFKTLTHDELKAILYEIISPKQRAVFEEKHDLDFAYSVPGLA
RFRGNLLMQHRGIAAVFRIIPSKILSADDLALPEAVRNLTKLKKGLVLVTGPTGSGKSTTLAAMIDLINSTRNEHILTLE
DPLEFIHENKMSLFNQRQIGEHSESFSAALRAALREDPDVILVGEMRDLETISLAMSAAETGHLVFGTLHTNSAAKTVDR
IVDVFPKDSQEQVRAMLSEALKGVICQQLLRTVDGKGRVAALEIMVGTPAIANLIRESKTFQIPSIMQTGRKDGMQLMDQ
HILDLLKTKRVTPEEAYRCCNDKKQFEQYLEPAS
MARIDALFKLMSDKGASDLHLSTGAPPIFRVRGEMERQNFKTLTHDELKAILYEIISPKQRAVFEEKHDLDFAYSVPGLA
RFRGNLLMQHRGIAAVFRIIPSKILSADDLALPEAVRNLTKLKKGLVLVTGPTGSGKSTTLAAMIDLINSTRNEHILTLE
DPLEFIHENKMSLFNQRQIGEHSESFSAALRAALREDPDVILVGEMRDLETISLAMSAAETGHLVFGTLHTNSAAKTVDR
IVDVFPKDSQEQVRAMLSEALKGVICQQLLRTVDGKGRVAALEIMVGTPAIANLIRESKTFQIPSIMQTGRKDGMQLMDQ
HILDLLKTKRVTPEEAYRCCNDKKQFEQYLEPAS
Nucleotide
Download Length: 1065 bp
>NTDB_id=632220 LPW11_RS06940 WP_230997399.1 1617915..1618979(-) (pilT) [Geomonas sp. RF6]
ATGGCAAGGATTGACGCGCTTTTCAAACTCATGAGCGACAAGGGAGCTTCCGACCTGCACCTCTCGACCGGCGCACCACC
GATCTTCCGTGTGCGCGGCGAGATGGAGCGGCAGAACTTCAAGACGCTGACGCACGACGAGCTGAAGGCGATCCTGTACG
AGATCATCTCCCCTAAGCAGCGGGCGGTCTTCGAGGAGAAGCACGATCTCGACTTCGCCTACAGCGTGCCGGGGCTGGCG
CGTTTCCGCGGCAATCTCCTGATGCAGCACCGCGGCATCGCCGCCGTCTTCAGGATCATCCCGAGCAAGATCCTCTCCGC
CGACGACCTCGCGCTTCCGGAAGCGGTGCGTAACCTGACGAAGCTGAAAAAGGGGCTCGTGCTGGTGACCGGCCCCACCG
GCTCCGGGAAGTCGACGACCCTCGCCGCGATGATCGACCTGATCAATTCGACGCGAAACGAGCACATCCTGACCCTGGAA
GACCCGCTGGAGTTCATCCACGAAAACAAGATGTCGCTCTTCAACCAGCGCCAGATCGGGGAGCACTCCGAGAGCTTCAG
CGCCGCGCTGCGTGCGGCGCTGCGCGAGGACCCGGACGTCATCCTCGTGGGGGAGATGCGCGACCTGGAGACGATAAGTC
TCGCCATGAGCGCCGCGGAGACCGGGCACCTGGTCTTCGGCACGCTGCACACCAACTCCGCCGCGAAGACGGTGGACAGG
ATTGTCGACGTCTTCCCGAAGGACTCGCAGGAGCAGGTGCGGGCGATGCTTTCCGAAGCGCTGAAGGGGGTAATCTGCCA
GCAGCTGCTGCGCACGGTGGACGGGAAGGGACGGGTGGCCGCCCTGGAGATCATGGTGGGGACCCCGGCGATAGCGAACC
TTATCAGGGAGTCGAAGACCTTCCAGATCCCCTCCATCATGCAGACGGGGCGGAAGGACGGGATGCAGCTGATGGACCAG
CACATCCTCGACCTGCTGAAGACAAAGAGGGTAACTCCCGAAGAAGCGTACCGCTGCTGCAACGACAAAAAGCAGTTCGA
GCAGTATCTGGAACCCGCCTCCTAG
ATGGCAAGGATTGACGCGCTTTTCAAACTCATGAGCGACAAGGGAGCTTCCGACCTGCACCTCTCGACCGGCGCACCACC
GATCTTCCGTGTGCGCGGCGAGATGGAGCGGCAGAACTTCAAGACGCTGACGCACGACGAGCTGAAGGCGATCCTGTACG
AGATCATCTCCCCTAAGCAGCGGGCGGTCTTCGAGGAGAAGCACGATCTCGACTTCGCCTACAGCGTGCCGGGGCTGGCG
CGTTTCCGCGGCAATCTCCTGATGCAGCACCGCGGCATCGCCGCCGTCTTCAGGATCATCCCGAGCAAGATCCTCTCCGC
CGACGACCTCGCGCTTCCGGAAGCGGTGCGTAACCTGACGAAGCTGAAAAAGGGGCTCGTGCTGGTGACCGGCCCCACCG
GCTCCGGGAAGTCGACGACCCTCGCCGCGATGATCGACCTGATCAATTCGACGCGAAACGAGCACATCCTGACCCTGGAA
GACCCGCTGGAGTTCATCCACGAAAACAAGATGTCGCTCTTCAACCAGCGCCAGATCGGGGAGCACTCCGAGAGCTTCAG
CGCCGCGCTGCGTGCGGCGCTGCGCGAGGACCCGGACGTCATCCTCGTGGGGGAGATGCGCGACCTGGAGACGATAAGTC
TCGCCATGAGCGCCGCGGAGACCGGGCACCTGGTCTTCGGCACGCTGCACACCAACTCCGCCGCGAAGACGGTGGACAGG
ATTGTCGACGTCTTCCCGAAGGACTCGCAGGAGCAGGTGCGGGCGATGCTTTCCGAAGCGCTGAAGGGGGTAATCTGCCA
GCAGCTGCTGCGCACGGTGGACGGGAAGGGACGGGTGGCCGCCCTGGAGATCATGGTGGGGACCCCGGCGATAGCGAACC
TTATCAGGGAGTCGAAGACCTTCCAGATCCCCTCCATCATGCAGACGGGGCGGAAGGACGGGATGCAGCTGATGGACCAG
CACATCCTCGACCTGCTGAAGACAAAGAGGGTAACTCCCGAAGAAGCGTACCGCTGCTGCAACGACAAAAAGCAGTTCGA
GCAGTATCTGGAACCCGCCTCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
55.977 |
96.893 |
0.542 |
| pilT | Acinetobacter nosocomialis M2 |
54.467 |
98.023 |
0.534 |
| pilT | Acinetobacter baumannii D1279779 |
54.467 |
98.023 |
0.534 |
| pilT | Acinetobacter baumannii strain A118 |
54.467 |
98.023 |
0.534 |
| pilT | Pseudomonas aeruginosa PAK |
56.156 |
94.068 |
0.528 |
| pilT | Legionella pneumophila strain Lp02 |
55.891 |
93.503 |
0.523 |
| pilT | Legionella pneumophila strain ERS1305867 |
55.891 |
93.503 |
0.523 |
| pilT | Acinetobacter baylyi ADP1 |
58.842 |
87.853 |
0.517 |
| pilT | Neisseria meningitidis 8013 |
53.216 |
96.61 |
0.514 |
| pilT | Neisseria gonorrhoeae MS11 |
52.924 |
96.61 |
0.511 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
53.916 |
93.785 |
0.506 |
| pilT | Vibrio cholerae strain A1552 |
53.916 |
93.785 |
0.506 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.858 |
99.153 |
0.494 |
| pilU | Vibrio cholerae strain A1552 |
41.411 |
92.09 |
0.381 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.24 |
94.068 |
0.379 |
| pilU | Acinetobacter baylyi ADP1 |
38.988 |
94.915 |
0.37 |