Detailed information NTG0630985

Bioinformatically predicted

Overview

• Name: pilT
• Type: Machinery gene
• Locus tag: LPH62_RS11235
• Genome accession: NZ_CP087693
• Coordinates: 2690573..2691607 (-)
• Length: 344 a.a.
• NCBI ID: WP_038272165.1
• Uniprot ID: -
• Organism: Xylella taiwanensis strain PLS429
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2685573..2696607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH62_RS11220 (LPH62_11220)	-	2686212..2687021 (-)	810	WP_038272108.1	DUF481 domain-containing protein	-
LPH62_RS11225 (LPH62_11225)	-	2688156..2689054 (+)	899	Protein_2212	WYL domain-containing protein	-
LPH62_RS11230 (LPH62_11230)	pilU	2689285..2690415 (-)	1131	WP_038272110.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LPH62_RS11235 (LPH62_11235)	pilT	2690573..2691607 (-)	1035	WP_038272165.1	type IV pilus twitching motility protein PilT	Machinery gene
LPH62_RS11240 (LPH62_11240)	-	2693212..2694063 (+)	852	WP_081755470.1	glycosyltransferase family 2 protein	-
LPH62_RS11245 (LPH62_11245)	-	2694234..2695487 (+)	1254	WP_038272115.1	flavohemoglobin expression-modulating QEGLA motif protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 38396.18 Da
• Isoelectric Point: 6.8843

>NTDB_id=630985 LPH62_RS11235 WP_038272165.1 2690573..2691607(-) (pilT) [Xylella taiwanensis strain PLS429]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQALIYDIMSDKQRRDYEESLEVDFSFEIPSLSR
FRVNAFSQERGAGAVFRTIPNKIMTLEELGCLPVFRQLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNVYGHILTIED
PIEFVHTSQKCLINQREVHRDTHGFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKIGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQHGMQTLDQHL
QDLIKRGLITRQQAREYAKDKASF

Nucleotide

• Length: 1035 bp

>NTDB_id=630985 LPH62_RS11235 WP_038272165.1 2690573..2691607(-) (pilT) [Xylella taiwanensis strain PLS429]
ATGGATATCGCTGAGCTATTAGCGTTTTCAGTCAAGAACAATGCTTCGGATCTGCATCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTCGATGGTGATGTACGCCGTATCAATATCCCTGCATTCGACCACAAGCAGGTGCAGGCACTGATTTACGACA
TCATGTCCGACAAGCAACGACGCGACTACGAGGAATCACTCGAAGTCGACTTCTCGTTCGAGATTCCGTCACTCTCCCGC
TTCCGCGTCAATGCATTCAGCCAAGAGCGTGGGGCAGGTGCTGTATTCCGTACCATTCCCAACAAGATAATGACCTTGGA
GGAACTCGGCTGCTTGCCGGTGTTCCGTCAACTTATTGAAGAGCCGCAGGGGTTGATCTTGGTGACCGGGCCGACTGGTT
CTGGCAAATCAACCACCCTCGCAGCCATGATCGACCATATCAATAAAAATGTGTACGGGCACATTCTCACAATCGAGGAT
CCGATTGAATTTGTTCACACCTCGCAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGACACCCACGGCTTCAACAA
AGCACTCAGCTCAGCTCTACGTGAGGATCCAGACATCATCTTGATTGGAGAACTGCGCGACCTGGAAACCATCCGTCTGG
CGCTGACTGCAGCCGAGACTGGTCACTTGGTATTCGGCACCTTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTCCCGGCCGCCGAGAAACCGATGGTACGCTCGATGCTCTCCGAGTCGCTATGCGGAATCATCTCACAGAT
GTTGTTGAAGAAAATCGGTGGTGGACGAACCGCAGCCTGGGAAATTATGGTTGGTACCCCTGCAATTCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCAATTCAAACTGGCCAGCAGCACGGTATGCAGACGCTTGATCAGCATTTA
CAGGATCTCATCAAGCGCGGTCTAATCACGCGCCAACAAGCACGCGAATACGCTAAGGATAAAGCGAGTTTTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (11-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilT	Pseudomonas stutzeri DSM 10701	75.581	100	0.756
pilT	Acinetobacter baumannii D1279779	75.291	100	0.753
pilT	Acinetobacter baumannii strain A118	75.291	100	0.753
pilT	Pseudomonas aeruginosa PAK	75.291	100	0.753
pilT	Acinetobacter baylyi ADP1	75.291	100	0.753
pilT	Acinetobacter nosocomialis M2	75.291	100	0.753
pilT	Legionella pneumophila strain Lp02	71.221	100	0.712
pilT	Legionella pneumophila strain ERS1305867	71.221	100	0.712
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	68.955	97.384	0.672
pilT	Vibrio cholerae strain A1552	68.955	97.384	0.672
pilT	Neisseria gonorrhoeae MS11	62.029	100	0.622
pilT	Neisseria meningitidis 8013	61.739	100	0.619
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	48.696	100	0.488
pilU	Pseudomonas stutzeri DSM 10701	41.298	98.547	0.407
pilU	Vibrio cholerae strain A1552	40.896	97.384	0.398
pilU	Acinetobacter baylyi ADP1	40	98.837	0.395