Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LPH40_RS11035 | Genome accession | NZ_CP087685 |
| Coordinates | 2652419..2653453 (-) | Length | 344 a.a. |
| NCBI ID | WP_038272165.1 | Uniprot ID | - |
| Organism | Xylella taiwanensis strain PLS4A | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2647419..2658453
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH40_RS11015 (LPH40_11015) | - | 2648058..2648867 (-) | 810 | WP_038272108.1 | DUF481 domain-containing protein | - |
| LPH40_RS11020 (LPH40_11020) | - | 2649044..2649844 (-) | 801 | WP_230428206.1 | hypothetical protein | - |
| LPH40_RS11025 (LPH40_11025) | - | 2650002..2650900 (+) | 899 | Protein_2173 | WYL domain-containing protein | - |
| LPH40_RS11030 (LPH40_11030) | pilU | 2651131..2652261 (-) | 1131 | WP_038272110.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LPH40_RS11035 (LPH40_11035) | pilT | 2652419..2653453 (-) | 1035 | WP_038272165.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LPH40_RS11040 (LPH40_11040) | - | 2655058..2655909 (+) | 852 | WP_081755470.1 | glycosyltransferase family 2 protein | - |
| LPH40_RS11045 (LPH40_11045) | - | 2656080..2657333 (+) | 1254 | WP_038272115.1 | flavohemoglobin expression-modulating QEGLA motif protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38396.18 Da Isoelectric Point: 6.8843
>NTDB_id=630879 LPH40_RS11035 WP_038272165.1 2652419..2653453(-) (pilT) [Xylella taiwanensis strain PLS4A]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQALIYDIMSDKQRRDYEESLEVDFSFEIPSLSR
FRVNAFSQERGAGAVFRTIPNKIMTLEELGCLPVFRQLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNVYGHILTIED
PIEFVHTSQKCLINQREVHRDTHGFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKIGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQHGMQTLDQHL
QDLIKRGLITRQQAREYAKDKASF
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQALIYDIMSDKQRRDYEESLEVDFSFEIPSLSR
FRVNAFSQERGAGAVFRTIPNKIMTLEELGCLPVFRQLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNVYGHILTIED
PIEFVHTSQKCLINQREVHRDTHGFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKIGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQHGMQTLDQHL
QDLIKRGLITRQQAREYAKDKASF
Nucleotide
Download Length: 1035 bp
>NTDB_id=630879 LPH40_RS11035 WP_038272165.1 2652419..2653453(-) (pilT) [Xylella taiwanensis strain PLS4A]
ATGGATATCGCTGAGCTATTAGCGTTTTCAGTCAAGAACAATGCTTCGGATCTGCATCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTCGATGGTGATGTACGCCGTATCAATATCCCTGCATTCGACCACAAGCAGGTGCAGGCACTGATTTACGACA
TCATGTCCGACAAGCAACGACGCGACTACGAGGAATCACTCGAAGTCGACTTCTCGTTCGAGATTCCGTCACTCTCCCGC
TTCCGCGTCAATGCATTCAGCCAAGAGCGTGGGGCAGGTGCTGTATTCCGTACCATTCCCAACAAGATAATGACCTTGGA
GGAACTCGGCTGCTTGCCGGTGTTCCGTCAACTTATTGAAGAGCCGCAGGGGTTGATCTTGGTGACCGGGCCGACTGGTT
CTGGCAAATCAACCACCCTCGCAGCCATGATCGACCATATCAATAAAAATGTGTACGGGCACATTCTCACAATCGAGGAT
CCGATTGAATTTGTTCACACCTCGCAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGACACCCACGGCTTCAACAA
AGCACTCAGCTCAGCTCTACGTGAGGATCCAGACATCATCTTGATTGGAGAACTGCGCGACCTGGAAACCATCCGTCTGG
CGCTGACTGCAGCCGAGACTGGTCACTTGGTATTCGGCACCTTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTCCCGGCCGCCGAGAAACCGATGGTACGCTCGATGCTCTCCGAGTCGCTATGCGGAATCATCTCACAGAT
GTTGTTGAAGAAAATCGGTGGTGGACGAACCGCAGCCTGGGAAATTATGGTTGGTACCCCTGCAATTCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCAATTCAAACTGGCCAGCAGCACGGTATGCAGACGCTTGATCAGCATTTA
CAGGATCTCATCAAGCGCGGTCTAATCACGCGCCAACAAGCACGCGAATACGCTAAGGATAAAGCGAGTTTTTGA
ATGGATATCGCTGAGCTATTAGCGTTTTCAGTCAAGAACAATGCTTCGGATCTGCATCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTCGATGGTGATGTACGCCGTATCAATATCCCTGCATTCGACCACAAGCAGGTGCAGGCACTGATTTACGACA
TCATGTCCGACAAGCAACGACGCGACTACGAGGAATCACTCGAAGTCGACTTCTCGTTCGAGATTCCGTCACTCTCCCGC
TTCCGCGTCAATGCATTCAGCCAAGAGCGTGGGGCAGGTGCTGTATTCCGTACCATTCCCAACAAGATAATGACCTTGGA
GGAACTCGGCTGCTTGCCGGTGTTCCGTCAACTTATTGAAGAGCCGCAGGGGTTGATCTTGGTGACCGGGCCGACTGGTT
CTGGCAAATCAACCACCCTCGCAGCCATGATCGACCATATCAATAAAAATGTGTACGGGCACATTCTCACAATCGAGGAT
CCGATTGAATTTGTTCACACCTCGCAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGACACCCACGGCTTCAACAA
AGCACTCAGCTCAGCTCTACGTGAGGATCCAGACATCATCTTGATTGGAGAACTGCGCGACCTGGAAACCATCCGTCTGG
CGCTGACTGCAGCCGAGACTGGTCACTTGGTATTCGGCACCTTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTCCCGGCCGCCGAGAAACCGATGGTACGCTCGATGCTCTCCGAGTCGCTATGCGGAATCATCTCACAGAT
GTTGTTGAAGAAAATCGGTGGTGGACGAACCGCAGCCTGGGAAATTATGGTTGGTACCCCTGCAATTCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCAATTCAAACTGGCCAGCAGCACGGTATGCAGACGCTTGATCAGCATTTA
CAGGATCTCATCAAGCGCGGTCTAATCACGCGCCAACAAGCACGCGAATACGCTAAGGATAAAGCGAGTTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
75.581 |
100 |
0.756 |
| pilT | Acinetobacter baumannii D1279779 |
75.291 |
100 |
0.753 |
| pilT | Acinetobacter baumannii strain A118 |
75.291 |
100 |
0.753 |
| pilT | Pseudomonas aeruginosa PAK |
75.291 |
100 |
0.753 |
| pilT | Acinetobacter baylyi ADP1 |
75.291 |
100 |
0.753 |
| pilT | Acinetobacter nosocomialis M2 |
75.291 |
100 |
0.753 |
| pilT | Legionella pneumophila strain Lp02 |
71.221 |
100 |
0.712 |
| pilT | Legionella pneumophila strain ERS1305867 |
71.221 |
100 |
0.712 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.955 |
97.384 |
0.672 |
| pilT | Vibrio cholerae strain A1552 |
68.955 |
97.384 |
0.672 |
| pilT | Neisseria gonorrhoeae MS11 |
62.029 |
100 |
0.622 |
| pilT | Neisseria meningitidis 8013 |
61.739 |
100 |
0.619 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.696 |
100 |
0.488 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.298 |
98.547 |
0.407 |
| pilU | Vibrio cholerae strain A1552 |
40.896 |
97.384 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
40 |
98.837 |
0.395 |