Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LPH42_RS11065 Genome accession   NZ_CP087678
Coordinates   2652335..2653369 (-) Length   344 a.a.
NCBI ID   WP_038272165.1    Uniprot ID   -
Organism   Xylella taiwanensis strain PLS206     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2647335..2658369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH42_RS11045 (LPH42_11045) - 2647974..2648783 (-) 810 WP_038272108.1 YdiY family protein -
  LPH42_RS11050 (LPH42_11050) - 2648960..2649760 (-) 801 WP_230428206.1 hypothetical protein -
  LPH42_RS11055 (LPH42_11055) - 2649918..2650816 (+) 899 Protein_2181 WYL domain-containing protein -
  LPH42_RS11060 (LPH42_11060) pilU 2651047..2652177 (-) 1131 WP_038272110.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LPH42_RS11065 (LPH42_11065) pilT 2652335..2653369 (-) 1035 WP_038272165.1 type IV pilus twitching motility protein PilT Machinery gene
  LPH42_RS11070 (LPH42_11070) - 2654974..2655825 (+) 852 WP_081755470.1 glycosyltransferase family 2 protein -
  LPH42_RS11075 (LPH42_11075) - 2655996..2657249 (+) 1254 WP_038272115.1 flavohemoglobin expression-modulating QEGLA motif protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38396.18 Da        Isoelectric Point: 6.8843

>NTDB_id=630819 LPH42_RS11065 WP_038272165.1 2652335..2653369(-) (pilT) [Xylella taiwanensis strain PLS206]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQALIYDIMSDKQRRDYEESLEVDFSFEIPSLSR
FRVNAFSQERGAGAVFRTIPNKIMTLEELGCLPVFRQLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNVYGHILTIED
PIEFVHTSQKCLINQREVHRDTHGFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKIGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQHGMQTLDQHL
QDLIKRGLITRQQAREYAKDKASF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=630819 LPH42_RS11065 WP_038272165.1 2652335..2653369(-) (pilT) [Xylella taiwanensis strain PLS206]
ATGGATATCGCTGAGCTATTAGCGTTTTCAGTCAAGAACAATGCTTCGGATCTGCATCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTCGATGGTGATGTACGCCGTATCAATATCCCTGCATTCGACCACAAGCAGGTGCAGGCACTGATTTACGACA
TCATGTCCGACAAGCAACGACGCGACTACGAGGAATCACTCGAAGTCGACTTCTCGTTCGAGATTCCGTCACTCTCCCGC
TTCCGCGTCAATGCATTCAGCCAAGAGCGTGGGGCAGGTGCTGTATTCCGTACCATTCCCAACAAGATAATGACCTTGGA
GGAACTCGGCTGCTTGCCGGTGTTCCGTCAACTTATTGAAGAGCCGCAGGGGTTGATCTTGGTGACCGGGCCGACTGGTT
CTGGCAAATCAACCACCCTCGCAGCCATGATCGACCATATCAATAAAAATGTGTACGGGCACATTCTCACAATCGAGGAT
CCGATTGAATTTGTTCACACCTCGCAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGACACCCACGGCTTCAACAA
AGCACTCAGCTCAGCTCTACGTGAGGATCCAGACATCATCTTGATTGGAGAACTGCGCGACCTGGAAACCATCCGTCTGG
CGCTGACTGCAGCCGAGACTGGTCACTTGGTATTCGGCACCTTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTCCCGGCCGCCGAGAAACCGATGGTACGCTCGATGCTCTCCGAGTCGCTATGCGGAATCATCTCACAGAT
GTTGTTGAAGAAAATCGGTGGTGGACGAACCGCAGCCTGGGAAATTATGGTTGGTACCCCTGCAATTCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCAATTCAAACTGGCCAGCAGCACGGTATGCAGACGCTTGATCAGCATTTA
CAGGATCTCATCAAGCGCGGTCTAATCACGCGCCAACAAGCACGCGAATACGCTAAGGATAAAGCGAGTTTTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

75.581

100

0.756
  pilT Acinetobacter baumannii D1279779

75.291

100

0.753
  pilT Acinetobacter baumannii strain A118

75.291

100

0.753
  pilT Pseudomonas aeruginosa PAK

75.291

100

0.753
  pilT Acinetobacter baylyi ADP1

75.291

100

0.753
  pilT Acinetobacter nosocomialis M2

75.291

100

0.753
  pilT Legionella pneumophila strain Lp02

71.221

100

0.712
  pilT Legionella pneumophila strain ERS1305867

71.221

100

0.712
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.955

97.384

0.672
  pilT Vibrio cholerae strain A1552

68.955

97.384

0.672
  pilT Neisseria gonorrhoeae MS11

62.029

100

0.622
  pilT Neisseria meningitidis 8013

61.739

100

0.619
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.696

100

0.488
  pilU Pseudomonas stutzeri DSM 10701

41.298

98.547

0.407
  pilU Vibrio cholerae strain A1552

40.896

97.384

0.398
  pilU Acinetobacter baylyi ADP1

40

98.837

0.395