NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	NYF25_RS08225	Genome accession	NZ_CP103850
Coordinates	1697144..1697746 (-)	Length	200 a.a.
NCBI ID	WP_000271547.1	Uniprot ID	Q2YT88
Organism	Staphylococcus aureus strain NRL 02/947
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1692144..1702746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYF25_RS08205 (NYF25_08205)	yajC	1693640..1693900 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
NYF25_RS08210 (NYF25_08210)	tgt	1693919..1695058 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
NYF25_RS08215 (NYF25_08215)	queA	1695081..1696106 (-)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
NYF25_RS08220 (NYF25_08220)	ruvB	1696108..1697112 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
NYF25_RS08225 (NYF25_08225)	ruvA	1697144..1697746 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
NYF25_RS08230 (NYF25_08230)	-	1697760..1698215 (-)	456	WP_000368902.1	ACT domain-containing protein	-
NYF25_RS08235 (NYF25_08235)	obgE	1698228..1699520 (-)	1293	WP_000496100.1	GTPase ObgE	-
NYF25_RS08240 (NYF25_08240)	rpmA	1699875..1700159 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
NYF25_RS08245 (NYF25_08245)	-	1700171..1700491 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
NYF25_RS08250 (NYF25_08250)	rplU	1700497..1700805 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
NYF25_RS08255 (NYF25_08255)	mreD	1700972..1701502 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
NYF25_RS08260 (NYF25_08260)	mreC	1701502..1702344 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
NYF25_RS08265 (NYF25_08265)	-	1702544..1702663 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 22262.46 Da Isoelectric Point: 6.0240

                                >NTDB_id=625650 NYF25_RS08225 WP_000271547.1 1697144..1697746(-) (ruvA) [Staphylococcus aureus strain NRL 02/947]

MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI

GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML

ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

Download Length: 603 bp

                                >NTDB_id=625650 NYF25_RS08225 WP_000271547.1 1697144..1697746(-) (ruvA) [Staphylococcus aureus strain NRL 02/947]

ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA

AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG

AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT

GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC

GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA

CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA

GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT

TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425

Detailed information NTG0625650