Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LGV82_RS04405 Genome accession   NZ_CP086104
Coordinates   932127..933170 (+) Length   347 a.a.
NCBI ID   WP_011002592.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS650     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 927127..938170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV82_RS04370 (LGV82_04360) - 927968..928216 (+) 249 WP_016726007.1 hypothetical protein -
  LGV82_RS04375 (LGV82_04365) - 928275..928517 (+) 243 WP_011002597.1 hypothetical protein -
  LGV82_RS04380 (LGV82_04370) - 928676..929176 (+) 501 WP_003271865.1 Dps family protein -
  LGV82_RS04385 (LGV82_04375) ubiA 929249..930124 (+) 876 WP_247393291.1 4-hydroxybenzoate octaprenyltransferase -
  LGV82_RS04390 (LGV82_04380) - 930121..930399 (-) 279 WP_011002595.1 hypothetical protein -
  LGV82_RS04395 (LGV82_04385) proC 930421..931245 (-) 825 WP_071011337.1 pyrroline-5-carboxylate reductase -
  LGV82_RS04400 (LGV82_04390) - 931280..932002 (-) 723 WP_021155191.1 YggS family pyridoxal phosphate-dependent enzyme -
  LGV82_RS04405 (LGV82_04395) pilT 932127..933170 (+) 1044 WP_011002592.1 type IV pilus twitching motility protein PilT Machinery gene
  LGV82_RS04410 (LGV82_04400) pilU 933223..934362 (+) 1140 WP_011002591.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LGV82_RS04415 (LGV82_04405) - 934557..934997 (+) 441 WP_016723685.1 type IV pilin protein -
  LGV82_RS04420 (LGV82_04410) - 935001..935489 (+) 489 WP_016723684.1 Tfp pilus assembly protein FimT/FimU -
  LGV82_RS04425 (LGV82_04415) pilV 935486..936076 (+) 591 WP_011002588.1 type IV pilus modification protein PilV -
  LGV82_RS04430 (LGV82_04420) - 936073..937101 (+) 1029 WP_016723683.1 PilW family protein -
  LGV82_RS04435 (LGV82_04425) - 937105..937641 (+) 537 WP_011002586.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38150.80 Da        Isoelectric Point: 6.8705

>NTDB_id=622545 LGV82_RS04405 WP_011002592.1 932127..933170(+) (pilT) [Ralstonia pseudosolanacearum strain RS650]
MDIAQLLAFAAKNKASDLHLSAGLPPMIRIHGDMRRINVPPLTHQDVHAMVYDIMSDVQRKHYEENLEADFSFEIPGLSR
FRVNAFNQNRGAAAVFRTIPSKVLTLEDLKAPAVFADLAMKPRGLVLVTGPTGSGKSTTLAAMVNHRNESDLGHILTVED
PIEFVHESKKSLINQRELGPHTHSFANALKSALREDPDVVLVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRV
VDVFPSDEKDMVRTMLSESLEAVISQTLLKTRDGSGRVAAHEIMICTPAIRHLIRENKISQMYSMMQTSSGLGMQTLDQC
LAELIKRSAINYADARAIAKNPDAFAN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=622545 LGV82_RS04405 WP_011002592.1 932127..933170(+) (pilT) [Ralstonia pseudosolanacearum strain RS650]
ATGGACATCGCGCAGCTTCTGGCCTTCGCTGCCAAGAACAAAGCGTCTGATCTGCACTTGTCGGCGGGCTTGCCTCCGAT
GATCCGGATCCATGGCGACATGCGCCGTATCAACGTGCCGCCGCTCACGCACCAGGATGTCCACGCCATGGTGTACGACA
TCATGAGCGACGTGCAGCGCAAGCATTACGAAGAAAACCTGGAAGCCGACTTCTCGTTCGAGATTCCCGGGCTGTCGCGT
TTCCGGGTCAACGCCTTCAACCAGAACCGCGGTGCCGCCGCCGTGTTCCGGACGATTCCGTCCAAGGTCCTGACGCTGGA
AGACCTGAAGGCGCCGGCCGTCTTCGCCGACCTCGCCATGAAGCCGCGCGGCCTGGTGCTGGTGACGGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTCAATCACCGCAATGAAAGCGACCTGGGCCACATCCTCACGGTGGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGAGCCTGATCAACCAGCGCGAACTGGGGCCGCATACCCATTCGTTTGCCAA
CGCGCTGAAATCGGCGCTGCGGGAAGACCCGGACGTGGTCCTGGTCGGCGAATTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACCGCGGCCGAAACCGGCCACTTGGTGTTTGGCACGCTGCACACGAGTTCCGCGGCCAAGACCATCGACCGGGTG
GTCGACGTGTTCCCCTCGGATGAGAAGGACATGGTCCGCACCATGTTGTCCGAATCGCTGGAAGCGGTGATCTCGCAGAC
GCTGCTCAAGACGCGCGACGGCTCCGGCCGGGTCGCGGCGCACGAGATCATGATCTGCACGCCGGCCATCCGACACCTGA
TCCGCGAGAACAAGATCTCGCAGATGTACTCGATGATGCAGACCAGCAGCGGGCTGGGCATGCAGACGCTGGACCAGTGC
CTGGCGGAGCTCATCAAGCGCTCGGCGATCAATTACGCCGACGCGCGCGCCATCGCCAAGAACCCGGACGCGTTCGCGAA
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

71.594

99.424

0.712
  pilT Acinetobacter baumannii D1279779

71.594

99.424

0.712
  pilT Acinetobacter baumannii strain A118

71.594

99.424

0.712
  pilT Pseudomonas aeruginosa PAK

71.304

99.424

0.709
  pilT Pseudomonas stutzeri DSM 10701

71.014

99.424

0.706
  pilT Acinetobacter baylyi ADP1

69.855

99.424

0.695
  pilT Neisseria gonorrhoeae MS11

68.497

99.712

0.683
  pilT Neisseria meningitidis 8013

68.497

99.712

0.683
  pilT Legionella pneumophila strain Lp02

67.826

99.424

0.674
  pilT Legionella pneumophila strain ERS1305867

67.826

99.424

0.674
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.172

97.118

0.643
  pilT Vibrio cholerae strain A1552

66.172

97.118

0.643
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.867

99.712

0.507
  pilU Acinetobacter baylyi ADP1

42.442

99.135

0.421
  pilU Pseudomonas stutzeri DSM 10701

42.388

96.542

0.409
  pilU Vibrio cholerae strain A1552

41.791

96.542

0.403