Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LJY16_RS12525 Genome accession   NZ_CP085981
Coordinates   2480129..2481109 (-) Length   326 a.a.
NCBI ID   WP_001055658.1    Uniprot ID   A0A0R9N9F2
Organism   Salmonella enterica strain SZL 30     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2475129..2486109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY16_RS12495 (LJY16_12495) endA 2475587..2476294 (+) 708 WP_023993947.1 deoxyribonuclease I -
  LJY16_RS12500 (LJY16_12500) rsmE 2476371..2477102 (+) 732 WP_023993946.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LJY16_RS12505 (LJY16_12505) gshB 2477122..2478069 (+) 948 WP_023232636.1 glutathione synthase -
  LJY16_RS12510 (LJY16_12510) - 2478285..2478848 (+) 564 WP_001053173.1 YqgE/AlgH family protein -
  LJY16_RS12515 (LJY16_12515) ruvX 2478848..2479264 (+) 417 WP_000017096.1 Holliday junction resolvase RuvX -
  LJY16_RS12520 (LJY16_12520) - 2479311..2479997 (-) 687 WP_023993945.1 IclR family transcriptional regulator -
  LJY16_RS12525 (LJY16_12525) pilT 2480129..2481109 (-) 981 WP_001055658.1 type IV pilus twitching motility protein PilT Machinery gene
  LJY16_RS12530 (LJY16_12530) - 2481127..2481831 (+) 705 WP_000997790.1 YggS family pyridoxal phosphate-dependent enzyme -
  LJY16_RS12535 (LJY16_12535) - 2481850..2482416 (+) 567 WP_001094848.1 YggT family protein -
  LJY16_RS12540 (LJY16_12540) yggU 2482413..2482703 (+) 291 WP_001277205.1 DUF167 family protein YggU -
  LJY16_RS12545 (LJY16_12545) - 2482711..2483304 (+) 594 WP_001174769.1 XTP/dITP diphosphatase -
  LJY16_RS12550 (LJY16_12550) hemW 2483297..2484433 (+) 1137 WP_023993944.1 radical SAM family heme chaperone HemW -
  LJY16_RS12555 (LJY16_12555) - 2484525..2485532 (-) 1008 WP_000252197.1 DUF1202 domain-containing protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36112.28 Da        Isoelectric Point: 7.5355

>NTDB_id=621876 LJY16_RS12525 WP_001055658.1 2480129..2481109(-) (pilT) [Salmonella enterica strain SZL 30]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=621876 LJY16_RS12525 WP_001055658.1 2480129..2481109(-) (pilT) [Salmonella enterica strain SZL 30]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGACCGCGCCTTTTACCGCGCCAGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ACGCGCAACAATATCAGTGGCGAACGCACGGTCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACTACGCTGGCGGCGATGGTGGGACATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTACGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R9N9F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Acinetobacter baumannii D1279779

44.954

100

0.451
  pilT Acinetobacter baumannii strain A118

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

44.954

100

0.451
  pilT Acinetobacter nosocomialis M2

44.648

100

0.448
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365
  pilU Pseudomonas stutzeri DSM 10701

35.65

100

0.362