Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LJU42_RS20705 Genome accession   NZ_CP085726
Coordinates   4320832..4321812 (-) Length   326 a.a.
NCBI ID   WP_088903072.1    Uniprot ID   -
Organism   Citrobacter freundii strain 56415CZ     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4315832..4326812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU42_RS20675 (LJU42_20675) - 4316608..4317105 (+) 498 WP_003838223.1 SprT family zinc-dependent metalloprotease -
  LJU42_RS20680 (LJU42_20680) endA 4317200..4317907 (+) 708 WP_016150969.1 deoxyribonuclease I -
  LJU42_RS20685 (LJU42_20685) rsmE 4317982..4318713 (+) 732 WP_003027080.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LJU42_RS20690 (LJU42_20690) gshB 4318733..4319680 (+) 948 WP_142972442.1 glutathione synthase -
  LJU42_RS20695 (LJU42_20695) - 4319856..4320419 (+) 564 WP_003027086.1 YqgE/AlgH family protein -
  LJU42_RS20700 (LJU42_20700) ruvX 4320419..4320835 (+) 417 WP_006686843.1 Holliday junction resolvase RuvX -
  LJU42_RS20705 (LJU42_20705) pilT 4320832..4321812 (-) 981 WP_088903072.1 type IV pilus twitching motility protein PilT Machinery gene
  LJU42_RS20710 (LJU42_20710) - 4321830..4322534 (+) 705 WP_003838215.1 YggS family pyridoxal phosphate-dependent enzyme -
  LJU42_RS20715 (LJU42_20715) - 4322553..4323119 (+) 567 WP_003825417.1 YggT family protein -
  LJU42_RS20720 (LJU42_20720) yggU 4323116..4323406 (+) 291 WP_003027101.1 DUF167 family protein YggU -
  LJU42_RS20725 (LJU42_20725) - 4323414..4324007 (+) 594 WP_003027104.1 XTP/dITP diphosphatase -
  LJU42_RS20730 (LJU42_20730) hemW 4324000..4325136 (+) 1137 WP_088903071.1 radical SAM family heme chaperone HemW -
  LJU42_RS20735 (LJU42_20735) - 4325199..4326206 (-) 1008 WP_003838210.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35906.99 Da        Isoelectric Point: 6.3638

>NTDB_id=619682 LJU42_RS20705 WP_088903072.1 4320832..4321812(-) (pilT) [Citrobacter freundii strain 56415CZ]
MNMEEIVALSVKHNVSDLHLCNAWPARWRRHGKVESAPFITPDVENLLMCWLSEQQQVQLQEQGQVDFAVTLTDSRRLRA
SAFVHLQGTSLALRLLPLDCPHLDDLQPPAVIPELLHSENGLILVTGATGSGKSTTLAAMVEYLNQHIEGHILTLEDPIE
YRYTSRRCLIQQREVGAHCASFSAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDS
FAATEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=619682 LJU42_RS20705 WP_088903072.1 4320832..4321812(-) (pilT) [Citrobacter freundii strain 56415CZ]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCCGCGCG
TTGGCGCAGACATGGAAAAGTCGAAAGCGCACCGTTTATCACGCCTGACGTAGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTTGCAGGAGCAAGGGCAGGTTGATTTTGCCGTTACCCTGACGGACTCCCGGCGGCTGCGCGCC
AGCGCATTTGTCCATCTGCAGGGAACCTCGCTGGCGCTAAGACTGCTACCGCTGGATTGTCCTCATTTAGACGATCTTCA
GCCTCCCGCGGTCATACCTGAACTGCTTCACAGTGAAAATGGGTTGATTCTGGTGACAGGCGCTACCGGCAGCGGTAAAT
CTACGACCCTGGCGGCGATGGTGGAGTATCTTAATCAGCATATTGAGGGGCACATTCTGACGCTGGAAGATCCTATTGAA
TATCGCTACACCAGCCGACGTTGTCTGATTCAACAGCGGGAGGTGGGCGCACATTGCGCCTCTTTCTCCGCCGGTTTGCG
CGGTGCGCTACGCGAAGATCCCGACGTTATTTTGCTTGGCGAGTTGCGCGACGTGGAAACCATTCGGCTGGCATTAACGG
CGGCGGAGACCGGACATCTGGTGCTGGCAACGTTACATACGCGAGGTGCGGCGCAGGCCATCGCGCGGCTGGTGGATTCC
TTTGCAGCAACAGAGAAAGATCCTGTGCGTAACCAACTGGCAGACAGCCTGCGGGCGGTTCTTTCGCAAAAACTTGAGGA
GGATAAGCAGGGGGGACGCGTGGCGCTATTCGAACTACTCGTCAACACGCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGCGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACATTTGCACAAAGTTTGCAGCAGCGA
CAGGCGCAGGGGCGGCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(35-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

46.951

100

0.472
  pilT Neisseria gonorrhoeae MS11

46.646

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

45.963

98.773

0.454
  pilT Legionella pneumophila strain Lp02

45.963

98.773

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.325

97.239

0.402
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

36.533

99.08

0.362