Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LH783_RS19090 Genome accession   NZ_CP085197
Coordinates   3923973..3924569 (-) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain NDM-101     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3918973..3929569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH783_RS19075 (LH783_19105) helD 3919184..3921238 (-) 2055 WP_065904894.1 DNA helicase IV -
  LH783_RS19080 (LH783_19110) - 3921363..3921809 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LH783_RS19085 (LH783_19115) yccS 3921827..3923962 (+) 2136 WP_065904896.1 YccS family putative transporter -
  LH783_RS19090 (LH783_19120) sxy/tfoX 3923973..3924569 (-) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  LH783_RS19095 (LH783_19125) - 3924587..3924892 (-) 306 WP_158238036.1 hypothetical protein -
  LH783_RS19100 (LH783_19130) sulA 3924918..3925427 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  LH783_RS19105 (LH783_19135) ompA 3925780..3926850 (+) 1071 WP_044521956.1 porin OmpA -
  LH783_RS19110 (LH783_19140) matP 3927058..3927510 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LH783_RS19115 (LH783_19145) - 3927696..3929453 (+) 1758 WP_065904898.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=615826 LH783_RS19090 WP_048323585.1 3923973..3924569(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain NDM-101]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=615826 LH783_RS19090 WP_048323585.1 3923973..3924569(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain NDM-101]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5