Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H8R35_RS05500 Genome accession   NZ_CP084085
Coordinates   1041539..1041850 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain MS2167     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036539..1046850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS05490 (H8R35_000914) - 1037222..1037863 (+) 642 WP_255020439.1 HAD family hydrolase -
  H8R35_RS05495 (H8R35_000915) nifJ 1037955..1041515 (+) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H8R35_RS05500 ctsR 1041539..1041850 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H8R35_RS05505 (H8R35_000916) ctsD 1041828..1043240 (+) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H8R35_RS05510 (H8R35_000917) ctsP 1043233..1043841 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H8R35_RS05515 (H8R35_000918) ctsX 1043845..1044432 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H8R35_RS05520 (H8R35_000919) ctsE 1044422..1045981 (+) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=609473 H8R35_RS05500 WP_002855438.1 1041539..1041850(+) (ctsR) [Campylobacter jejuni strain MS2167]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=609473 H8R35_RS05500 WP_002855438.1 1041539..1041850(+) (ctsR) [Campylobacter jejuni strain MS2167]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1