Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LCF41_RS17605 | Genome accession | NZ_CP084032 |
| Coordinates | 3888861..3889877 (-) | Length | 338 a.a. |
| NCBI ID | WP_225085676.1 | Uniprot ID | - |
| Organism | Pectobacterium colocasium strain LJ1 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3883861..3894877
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF41_RS17590 | nsrR | 3884246..3884671 (-) | 426 | WP_010279087.1 | nitric oxide-sensing transcriptional repressor NsrR | - |
| LCF41_RS17595 | - | 3884966..3886537 (+) | 1572 | WP_225085674.1 | methyl-accepting chemotaxis protein | - |
| LCF41_RS17600 | - | 3887066..3888892 (+) | 1827 | WP_225085675.1 | diguanylate cyclase | - |
| LCF41_RS17605 | pilT | 3888861..3889877 (-) | 1017 | WP_225085676.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LCF41_RS17610 | - | 3889898..3890626 (+) | 729 | WP_225085677.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LCF41_RS17615 | proC | 3890717..3891538 (+) | 822 | WP_225085678.1 | pyrroline-5-carboxylate reductase | - |
| LCF41_RS17620 | - | 3891587..3892141 (+) | 555 | WP_010295003.1 | YggT family protein | - |
| LCF41_RS17625 | yggU | 3892138..3892428 (+) | 291 | WP_225085679.1 | DUF167 family protein YggU | - |
| LCF41_RS17630 | rdgB | 3892460..3893053 (+) | 594 | WP_225085680.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| LCF41_RS17635 | hemW | 3893046..3894188 (+) | 1143 | WP_225085681.1 | radical SAM family heme chaperone HemW | - |
Sequence
Protein
Download Length: 338 a.a. Molecular weight: 36879.27 Da Isoelectric Point: 6.8192
>NTDB_id=609099 LCF41_RS17605 WP_225085676.1 3888861..3889877(-) (pilT) [Pectobacterium colocasium strain LJ1]
MELDEWMVRSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTPEQVAQWCNAWLEPAQREQLRQFGQVDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSAQPSLDGLQAPPVLSMLLEKPNGLILITGATGSGKSTTLAAMIGALNDSSDRHVITLE
DPIEFIHVSRRCLIQQREIGAHSASFAQALRAALREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPVAQGGRIALYEVLTATAAVSNLIREGKTHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHSCALAV
MELDEWMVRSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTPEQVAQWCNAWLEPAQREQLRQFGQVDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSAQPSLDGLQAPPVLSMLLEKPNGLILITGATGSGKSTTLAAMIGALNDSSDRHVITLE
DPIEFIHVSRRCLIQQREIGAHSASFAQALRAALREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPVAQGGRIALYEVLTATAAVSNLIREGKTHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHSCALAV
Nucleotide
Download Length: 1017 bp
>NTDB_id=609099 LCF41_RS17605 WP_225085676.1 3888861..3889877(-) (pilT) [Pectobacterium colocasium strain LJ1]
ATGGAATTGGATGAGTGGATGGTGCGTAGTGTAAAACATAATGCCTCGGATCTGCACCTTTGTAGCGGCCACCCTCCGGT
GCTACGAGTGGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGCCGGAGCAGGTGGCGCAATGGTGCAATG
CCTGGCTCGAACCCGCGCAGCGAGAGCAACTGCGGCAGTTTGGTCAGGTGGACGGCGCGTTAATGCTGCCCGATGGGCAA
CGTCTGCGGGTGAATGTGTTTCGCCAGCGGGAAGGGCTGTCTGCGGCGCTGCGTATTATTCCGTCGGCTCAGCCTTCATT
GGACGGGCTACAGGCGCCACCCGTTCTGTCGATGCTGCTGGAGAAACCGAACGGACTGATCCTGATTACTGGTGCGACGG
GGAGTGGCAAGTCCACGACGCTGGCAGCCATGATCGGGGCGTTAAACGACAGCAGCGATCGCCATGTGATTACACTGGAG
GATCCGATCGAGTTTATCCATGTCAGCCGGCGTTGCCTGATTCAACAGCGAGAGATCGGTGCACACAGCGCGTCTTTTGC
GCAGGCGTTACGGGCGGCATTGCGGGAAGATCCCGATGTGATTCTGCTGGGGGAACTTCGTGATACAGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGCCATCTGGTGTTATCTACGCTGCATACACGCAGCGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCCGGTGAAGAAAAAGCCTATGTTCGCAGCCAGCTCGCCACCTGTTTGCAGGCCGTGGTGACGCA
AAGGCTGTTGCCTGTAGCGCAAGGCGGCCGCATTGCGCTTTATGAAGTGCTGACGGCGACTGCGGCGGTCAGCAACCTGA
TTCGGGAAGGGAAAACGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCGGCGGGAATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAGTTGCGCCCTTGCCGTTTAG
ATGGAATTGGATGAGTGGATGGTGCGTAGTGTAAAACATAATGCCTCGGATCTGCACCTTTGTAGCGGCCACCCTCCGGT
GCTACGAGTGGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGCCGGAGCAGGTGGCGCAATGGTGCAATG
CCTGGCTCGAACCCGCGCAGCGAGAGCAACTGCGGCAGTTTGGTCAGGTGGACGGCGCGTTAATGCTGCCCGATGGGCAA
CGTCTGCGGGTGAATGTGTTTCGCCAGCGGGAAGGGCTGTCTGCGGCGCTGCGTATTATTCCGTCGGCTCAGCCTTCATT
GGACGGGCTACAGGCGCCACCCGTTCTGTCGATGCTGCTGGAGAAACCGAACGGACTGATCCTGATTACTGGTGCGACGG
GGAGTGGCAAGTCCACGACGCTGGCAGCCATGATCGGGGCGTTAAACGACAGCAGCGATCGCCATGTGATTACACTGGAG
GATCCGATCGAGTTTATCCATGTCAGCCGGCGTTGCCTGATTCAACAGCGAGAGATCGGTGCACACAGCGCGTCTTTTGC
GCAGGCGTTACGGGCGGCATTGCGGGAAGATCCCGATGTGATTCTGCTGGGGGAACTTCGTGATACAGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGCCATCTGGTGTTATCTACGCTGCATACACGCAGCGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCCGGTGAAGAAAAAGCCTATGTTCGCAGCCAGCTCGCCACCTGTTTGCAGGCCGTGGTGACGCA
AAGGCTGTTGCCTGTAGCGCAAGGCGGCCGCATTGCGCTTTATGAAGTGCTGACGGCGACTGCGGCGGTCAGCAACCTGA
TTCGGGAAGGGAAAACGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCGGCGGGAATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAGTTGCGCCCTTGCCGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.