Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LCF43_RS04165 | Genome accession | NZ_CP084023 |
| Coordinates | 926720..927736 (+) | Length | 338 a.a. |
| NCBI ID | WP_225181992.1 | Uniprot ID | - |
| Organism | Pectobacterium aroidearum strain LJ2 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 921720..932736
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF43_RS04130 | - | 921948..922208 (-) | 261 | WP_015841595.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LCF43_RS04135 | hemW | 922437..923579 (-) | 1143 | WP_040044026.1 | radical SAM family heme chaperone HemW | - |
| LCF43_RS04140 | - | 923572..924165 (-) | 594 | WP_194430996.1 | XTP/dITP diphosphatase | - |
| LCF43_RS04145 | yggU | 924183..924473 (-) | 291 | WP_010279110.1 | DUF167 family protein YggU | - |
| LCF43_RS04150 | - | 924470..925024 (-) | 555 | WP_010295003.1 | YggT family protein | - |
| LCF43_RS04155 | proC | 925073..925894 (-) | 822 | WP_015841592.1 | pyrroline-5-carboxylate reductase | - |
| LCF43_RS04160 | - | 925985..926698 (-) | 714 | WP_181829235.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LCF43_RS04165 | pilT | 926720..927736 (+) | 1017 | WP_225181992.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LCF43_RS04170 | - | 927705..929531 (-) | 1827 | WP_015841589.1 | diguanylate cyclase | - |
| LCF43_RS04175 | - | 930058..931629 (-) | 1572 | WP_181848552.1 | methyl-accepting chemotaxis protein | - |
| LCF43_RS04180 | nsrR | 931946..932371 (+) | 426 | WP_015841587.1 | nitric oxide-sensing transcriptional repressor NsrR | - |
Sequence
Protein
Download Length: 338 a.a. Molecular weight: 36841.06 Da Isoelectric Point: 6.7684
>NTDB_id=609019 LCF43_RS04165 WP_225181992.1 926720..927736(+) (pilT) [Pectobacterium aroidearum strain LJ2]
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTSEQVAQWCDAWLEPAQREQLRQFGQIDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSVQPSLDGLHAPPVLSTLLEKPNGLILITGATGSGKSTTLAAMLGALNDSSDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFAQALRATLREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPSAHGGRIALYEVLTATAAVGNLIREGKTHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHNCALAV
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTSEQVAQWCDAWLEPAQREQLRQFGQIDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSVQPSLDGLHAPPVLSTLLEKPNGLILITGATGSGKSTTLAAMLGALNDSSDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFAQALRATLREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPSAHGGRIALYEVLTATAAVGNLIREGKTHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHNCALAV
Nucleotide
Download Length: 1017 bp
>NTDB_id=609019 LCF43_RS04165 WP_225181992.1 926720..927736(+) (pilT) [Pectobacterium aroidearum strain LJ2]
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCAGATCTGCACCTTTGTAGCGGCCACCCGCCGGT
GTTACGTGTCGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGTCGGAGCAGGTGGCACAATGGTGCGATG
CCTGGCTTGAACCCGCTCAGAGAGAACAACTGCGGCAGTTTGGTCAGATAGACGGCGCGTTAATGCTGCCTGATGGGCAG
CGTCTGCGGGTAAATGTGTTTCGCCAGCGAGAAGGGCTGTCCGCGGCGCTGCGTATTATCCCGTCCGTTCAGCCGTCATT
GGACGGGCTACACGCGCCACCCGTTCTGTCGACGCTGCTGGAGAAACCGAACGGGCTGATCCTGATTACCGGTGCGACGG
GGAGCGGTAAATCCACGACGCTGGCGGCAATGCTCGGGGCGTTAAATGACAGCAGCGATCGCCATGTGATTACGCTGGAG
GATCCGATCGAGTTTATCCATGCCAGCCGACGCTGCCTGATTCAACAGCGAGAGATCGGTGCGCACAGCGCGTCTTTTGC
ACAGGCGCTACGGGCCACCTTGCGGGAAGATCCCGATGTGATTCTGCTGGGAGAATTGCGCGATACGGAGACGATTCGGC
TGGCGCTGACAGCGGCGGAAACCGGCCATCTGGTGCTATCCACGCTGCATACGCGCAGTGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCCGGTGAAGAGAAAGCCTATGTTCGCAGTCAGCTAGCCACCTGCTTGCAGGCCGTGGTTACGCA
AAGGTTGCTGCCTTCAGCACACGGCGGTCGCATTGCGCTTTATGAAGTGCTGACGGCGACAGCGGCAGTCGGCAACCTGA
TTCGGGAAGGGAAAACGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCTGCGGGCATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAATTGCGCCCTTGCCGTTTAG
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCAGATCTGCACCTTTGTAGCGGCCACCCGCCGGT
GTTACGTGTCGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGTCGGAGCAGGTGGCACAATGGTGCGATG
CCTGGCTTGAACCCGCTCAGAGAGAACAACTGCGGCAGTTTGGTCAGATAGACGGCGCGTTAATGCTGCCTGATGGGCAG
CGTCTGCGGGTAAATGTGTTTCGCCAGCGAGAAGGGCTGTCCGCGGCGCTGCGTATTATCCCGTCCGTTCAGCCGTCATT
GGACGGGCTACACGCGCCACCCGTTCTGTCGACGCTGCTGGAGAAACCGAACGGGCTGATCCTGATTACCGGTGCGACGG
GGAGCGGTAAATCCACGACGCTGGCGGCAATGCTCGGGGCGTTAAATGACAGCAGCGATCGCCATGTGATTACGCTGGAG
GATCCGATCGAGTTTATCCATGCCAGCCGACGCTGCCTGATTCAACAGCGAGAGATCGGTGCGCACAGCGCGTCTTTTGC
ACAGGCGCTACGGGCCACCTTGCGGGAAGATCCCGATGTGATTCTGCTGGGAGAATTGCGCGATACGGAGACGATTCGGC
TGGCGCTGACAGCGGCGGAAACCGGCCATCTGGTGCTATCCACGCTGCATACGCGCAGTGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCCGGTGAAGAGAAAGCCTATGTTCGCAGTCAGCTAGCCACCTGCTTGCAGGCCGTGGTTACGCA
AAGGTTGCTGCCTTCAGCACACGGCGGTCGCATTGCGCTTTATGAAGTGCTGACGGCGACAGCGGCAGTCGGCAACCTGA
TTCGGGAAGGGAAAACGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCTGCGGGCATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAATTGCGCCCTTGCCGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.