Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LCH17_RS08165 Genome accession   NZ_CP083944
Coordinates   1819006..1820040 (+) Length   344 a.a.
NCBI ID   WP_011707389.1    Uniprot ID   A0A081UZ58
Organism   Aeromonas hydrophila strain CSUSB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1814006..1825040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH17_RS08135 (LCH17_08135) - 1815685..1815996 (+) 312 WP_042064670.1 hypothetical protein -
  LCH17_RS08140 (LCH17_08140) - 1816053..1816472 (-) 420 WP_224481122.1 DUF4426 domain-containing protein -
  LCH17_RS08145 (LCH17_08145) yggU 1816491..1816790 (-) 300 WP_011707385.1 DUF167 family protein YggU -
  LCH17_RS08150 (LCH17_08150) - 1816790..1817341 (-) 552 WP_016351969.1 YggT family protein -
  LCH17_RS08155 (LCH17_08155) proC 1817382..1818206 (-) 825 WP_073351728.1 pyrroline-5-carboxylate reductase -
  LCH17_RS08160 (LCH17_08160) - 1818265..1818966 (-) 702 WP_073351730.1 YggS family pyridoxal phosphate-dependent enzyme -
  LCH17_RS08165 (LCH17_08165) pilT 1819006..1820040 (+) 1035 WP_011707389.1 type IVa pilus ATPase TapT Machinery gene
  LCH17_RS08170 (LCH17_08170) pilU 1820069..1821178 (+) 1110 WP_017411211.1 type IVa pilus ATPase TapU Machinery gene
  LCH17_RS08175 (LCH17_08175) yaaA 1821210..1821983 (+) 774 WP_224481123.1 peroxide stress protein YaaA -
  LCH17_RS08180 (LCH17_08180) srmB 1822160..1823383 (-) 1224 WP_016351974.1 ATP-dependent RNA helicase SrmB -
  LCH17_RS08185 (LCH17_08185) - 1823512..1824222 (+) 711 WP_073351735.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38287.06 Da        Isoelectric Point: 6.7439

>NTDB_id=608722 LCH17_RS08165 WP_011707389.1 1819006..1820040(+) (pilT) [Aeromonas hydrophila strain CSUSB2]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVAALDAKAKAVDPNTI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=608722 LCH17_RS08165 WP_011707389.1 1819006..1820040(+) (pilT) [Aeromonas hydrophila strain CSUSB2]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAACATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGCGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACACCGGGAAGTGCACGCCCTCATCTACGACA
TCATGAACGACCACCAGCGCAAGGAGCTGGAAGAGAACTTCGAGGTGGACTTCTCGTTCGAGGTGCCGAACCTGGCCCGC
TTCCGGGTCAACGCCTTCCAGCAGGCACGCGGCTCAGGCGCGGTATTTCGTACTATCCCCAGCACGGTGCTGAGCCTCGA
AGATCTCGACGCGCCGGAGATCTTTCGCAAGATTGCCGAATACCCGCGCGGCCTGGTGCTGGTGACAGGTCCGACCGGCT
CGGGTAAATCCACCACCCTGGCGGCCATGGTCAACTACATCAACGAGAACTTTCACCACCACATCCTCACCATCGAGGAC
CCCATCGAATTCGTGCACGAGAACAAGCGCTGCCTGGTAAACCAGCGGGAAGTGCACCGCGACACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCGCTGCGGGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGCGATCTGGAAACCATTCGTCTGG
CCATGACTGCGGCCGAGACTGGCCACCTGGTGTTCGGTACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCCGGTGCGGAAAAAGACATGGTGCGCTCTATGCTATCCGAGTCGCTGCGGGCGGTCATCTCTCAGAC
CCTGCTCAAGCGCATCGGTGGCGGCCGGGTGGCGGCCCACGAGATCATGATGGGCATTCCCGCCGTGCGTAACCTCATCC
GGGAAGACAAGATCGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGCCGCGGCGTAGTGGCGGCGCTGGATGCCAAGGCCAAGGCGGTCGATCCCAACACCATCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081UZ58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.326

100

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.833

99.128

0.762
  pilT Pseudomonas aeruginosa PAK

75.953

99.128

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

76.558

97.965

0.75
  pilT Vibrio cholerae strain A1552

76.558

97.965

0.75
  pilT Legionella pneumophila strain Lp02

72.647

98.837

0.718
  pilT Legionella pneumophila strain ERS1305867

72.647

98.837

0.718
  pilT Neisseria meningitidis 8013

70.796

98.547

0.698
  pilT Neisseria gonorrhoeae MS11

70.501

98.547

0.695
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407