Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   A464_RS15030 Genome accession   NC_021870
Coordinates   3112902..3113882 (-) Length   326 a.a.
NCBI ID   WP_020845206.1    Uniprot ID   -
Organism   Salmonella bongori N268-08     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3107902..3118882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A464_RS15000 (A464_3114) endA 3108368..3109075 (+) 708 WP_020845201.1 deoxyribonuclease I -
  A464_RS15005 (A464_3115) rsmE 3109152..3109883 (+) 732 WP_015703003.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  A464_RS15010 (A464_3116) gshB 3109903..3110850 (+) 948 WP_020845203.1 glutathione synthase -
  A464_RS15015 (A464_3118) - 3111066..3111629 (+) 564 WP_001053162.1 YqgE/AlgH family protein -
  A464_RS15020 (A464_3119) ruvX 3111629..3112045 (+) 417 WP_000072425.1 Holliday junction resolvase RuvX -
  A464_RS15025 (A464_3120) - 3112085..3112771 (-) 687 WP_020845205.1 IclR family transcriptional regulator -
  A464_RS15030 (A464_3121) pilT 3112902..3113882 (-) 981 WP_020845206.1 type IV pilus twitching motility protein PilT Machinery gene
  A464_RS15035 (A464_3122) - 3113900..3114604 (+) 705 WP_020845207.1 YggS family pyridoxal phosphate-dependent enzyme -
  A464_RS15040 (A464_3123) - 3114623..3115189 (+) 567 WP_001094852.1 YggT family protein -
  A464_RS15045 (A464_3124) yggU 3115186..3115476 (+) 291 WP_001277203.1 DUF167 family protein YggU -
  A464_RS15050 (A464_3125) - 3115484..3116077 (+) 594 WP_001174772.1 XTP/dITP diphosphatase -
  A464_RS15055 (A464_3126) hemW 3116070..3117206 (+) 1137 WP_020845208.1 radical SAM family heme chaperone HemW -
  A464_RS15060 (A464_3128) ansB 3117312..3118358 (-) 1047 WP_020845210.1 L-asparaginase 2 -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36323.57 Da        Isoelectric Point: 7.5842

>NTDB_id=60607 A464_RS15030 WP_020845206.1 3112902..3113882(-) (pilT) [Salmonella bongori N268-08]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKRGRIENAPFIAPDVDMLLRDWLNDAQQYQWRTHGQLDFAVSLSGAQRLRA
SAFRHQQGASLALRLLPDRCPSLEEIQTPPIVPTLLASENGLILVTGATGSGKSTTLAAMVGYLNHHVDKHILTLEDPIE
YRYASQRCLIQQREVGQHCATFAAGLRAALREDPDVILLGELRDSETIHLALTAAETGHLVLATLHTRGAAQAIERLMDS
FPAQEKEPMRRQLAGSLRAVLSQKLEADKQEGRVALFELLINTPATGNLIREGKLHQLPHVIQTGQQQGMMTFAQSAQWR
QTQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=60607 A464_RS15030 WP_020845206.1 3112902..3113882(-) (pilT) [Salmonella bongori N268-08]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAATGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACGAGGACGAATAGAGAATGCGCCTTTTATCGCGCCTGATGTTGATATGCTTCTGCGTGATTGGCTCAATG
ACGCGCAACAATATCAGTGGCGAACACACGGCCAGCTTGATTTCGCCGTCTCGCTTTCAGGGGCGCAACGTCTGCGTGCC
AGCGCGTTCAGACACCAACAGGGAGCATCGTTGGCGCTACGGTTATTGCCAGATCGTTGTCCTTCGCTGGAGGAGATCCA
GACGCCCCCCATCGTGCCGACACTGCTTGCCAGCGAGAATGGGCTGATACTGGTTACCGGCGCGACTGGCAGCGGTAAAT
CTACCACGCTGGCGGCGATGGTGGGTTATCTTAATCACCATGTCGATAAGCATATCCTGACCCTGGAAGATCCTATAGAG
TACCGTTACGCCAGCCAGCGTTGCCTGATACAGCAGCGGGAAGTCGGCCAGCATTGCGCCACTTTCGCCGCCGGGTTGCG
TGCGGCGCTGCGTGAAGATCCGGATGTCATCCTGCTGGGCGAGTTGCGTGATAGCGAGACCATTCATCTGGCGCTAACGG
CGGCGGAGACGGGACATTTGGTACTGGCGACCTTGCATACCCGCGGTGCGGCGCAGGCCATCGAAAGACTGATGGATAGC
TTTCCGGCGCAGGAGAAAGAGCCGATGCGTCGTCAACTGGCGGGCAGCCTGCGCGCCGTACTATCGCAAAAACTGGAAGC
AGACAAACAGGAGGGGCGCGTGGCGTTATTTGAATTACTGATTAATACGCCAGCTACAGGGAATTTGATCCGTGAAGGTA
AACTCCATCAGTTGCCCCACGTGATACAGACCGGGCAGCAGCAGGGGATGATGACATTTGCCCAAAGCGCACAATGGCGT
CAGACACAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

45.872

100

0.46
  pilT Acinetobacter baumannii strain A118

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Acinetobacter baumannii D1279779

45.566

100

0.457
  pilT Pseudomonas aeruginosa PAK

46.519

96.933

0.451
  pilT Pseudomonas stutzeri DSM 10701

46.203

96.933

0.448
  pilT Legionella pneumophila strain ERS1305867

45.912

97.546

0.448
  pilT Legionella pneumophila strain Lp02

45.912

97.546

0.448
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.498

97.853

0.386
  pilU Pseudomonas stutzeri DSM 10701

36.97

100

0.374
  pilU Acinetobacter baylyi ADP1

37.152

99.08

0.368

Multiple sequence alignment