Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K8O89_RS12365 Genome accession   NZ_CP082852
Coordinates   2745338..2746042 (-) Length   234 a.a.
NCBI ID   WP_396426818.1    Uniprot ID   -
Organism   Legionella anisa strain FDAARGOS_1480     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2740338..2751042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O89_RS12340 (K8O89_12330) prfA 2740728..2741816 (-) 1089 WP_019234740.1 peptide chain release factor 1 -
  K8O89_RS12345 (K8O89_12335) hemA 2741800..2743074 (-) 1275 WP_019234741.1 glutamyl-tRNA reductase -
  K8O89_RS12350 (K8O89_12340) - 2743348..2743629 (+) 282 WP_019234742.1 hypothetical protein -
  K8O89_RS12355 (K8O89_12345) - 2743641..2744705 (+) 1065 WP_019234743.1 RIP metalloprotease -
  K8O89_RS12360 (K8O89_12350) - 2744888..2745232 (+) 345 WP_019234744.1 hypothetical protein -
  K8O89_RS12365 (K8O89_12355) comFC 2745338..2746042 (-) 705 WP_396426818.1 ComF family protein Machinery gene
  K8O89_RS12370 (K8O89_12360) bioC 2746079..2746951 (+) 873 WP_019234746.1 malonyl-ACP O-methyltransferase BioC -
  K8O89_RS12375 (K8O89_12365) - 2747121..2748005 (-) 885 WP_019234747.1 polyprenyl synthetase family protein -
  K8O89_RS12380 (K8O89_12370) - 2747995..2748216 (-) 222 WP_019234748.1 exodeoxyribonuclease VII small subunit -
  K8O89_RS12385 (K8O89_12375) radA 2748445..2749794 (+) 1350 WP_019234749.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26745.56 Da        Isoelectric Point: 9.9216

>NTDB_id=603053 K8O89_RS12365 WP_396426818.1 2745338..2746042(-) (comFC) [Legionella anisa strain FDAARGOS_1480]
MRQKIWSLTQSLRLYSICVLCNQFHNSKIAVCISCIEFMTRLGPACNYCAYPLPDTHLLVCGRCIKKTPYFDRALIHYVF
EEPLRNLLHQFKYHNGLYLGSFLSQLMIRSLPKNETMPQCLIPVPMHPQRVKSRGFNQAAVLARLLAKKLQLPYDLTSCQ
KILNTEPQASLDGEQRQKNLRHAFKAKKIPWHHVAIVDDLLTTGSTANELAFTLKKSGVKKVDVWCCARTVGKS

Nucleotide


Download         Length: 705 bp        

>NTDB_id=603053 K8O89_RS12365 WP_396426818.1 2745338..2746042(-) (comFC) [Legionella anisa strain FDAARGOS_1480]
GTGCGCCAGAAAATATGGAGTTTAACACAAAGTTTACGCTTGTACTCAATATGTGTTTTATGCAATCAGTTTCATAACAG
CAAAATAGCAGTATGCATCTCATGCATTGAGTTCATGACTCGCTTAGGTCCTGCGTGCAACTACTGCGCATATCCTTTGC
CCGACACCCATCTGTTAGTCTGTGGACGTTGTATTAAAAAAACACCTTACTTCGATCGCGCACTTATTCATTACGTCTTC
GAAGAGCCTCTGCGCAATCTTTTGCATCAATTTAAATACCACAATGGTCTTTATCTAGGGTCTTTTTTAAGTCAATTAAT
GATTCGCTCACTACCAAAGAATGAAACAATGCCTCAATGTTTAATCCCCGTCCCTATGCATCCACAACGAGTCAAGTCGC
GCGGGTTTAACCAGGCAGCAGTTTTAGCTCGATTACTCGCAAAAAAATTACAGTTACCTTACGACTTAACCAGTTGTCAA
AAGATCCTTAATACAGAGCCCCAAGCAAGTCTTGACGGCGAACAAAGACAAAAAAATTTACGTCATGCATTTAAAGCAAA
AAAAATTCCCTGGCACCATGTAGCAATTGTTGATGATCTCTTAACTACTGGCAGCACAGCCAATGAGCTGGCATTCACGT
TAAAAAAATCGGGGGTAAAAAAGGTAGATGTATGGTGTTGTGCACGAACCGTGGGTAAATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

66.667

100

0.667
  comFC Legionella pneumophila strain ERS1305867

66.837

83.761

0.56